Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6950_RS02600 Genome accession   NZ_CP027550
Coordinates   498220..498849 (+) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain 2015C-4136CT1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 493220..503849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6950_RS02575 ycbZ 493609..495369 (-) 1761 WP_021559822.1 Lon protease family protein -
  C6950_RS02580 matP 495555..496007 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  C6950_RS02585 ompA 496084..497136 (-) 1053 WP_001346420.1 porin OmpA -
  C6950_RS02595 sulA 497492..498001 (-) 510 WP_001357107.1 SOS-induced cell division inhibitor SulA -
  C6950_RS02600 sxy/tfoX 498220..498849 (+) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6950_RS02605 yccS 498812..500974 (-) 2163 WP_001357106.1 YccS family putative transporter -
  C6950_RS02610 yccF 500984..501430 (-) 447 WP_001261236.1 YccF domain-containing protein -
  C6950_RS02615 helD 501553..503607 (+) 2055 WP_001357105.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=278048 C6950_RS02600 WP_000839151.1 498220..498849(+) (sxy/tfoX) [Escherichia coli strain 2015C-4136CT1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=278048 C6950_RS02600 WP_000839151.1 498220..498849(+) (sxy/tfoX) [Escherichia coli strain 2015C-4136CT1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment