Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6992_RS13680 Genome accession   NZ_CP027548
Coordinates   2479946..2480575 (-) Length   209 a.a.
NCBI ID   WP_000839145.1    Uniprot ID   -
Organism   Escherichia coli strain 2014C-3061     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2469160..2491749 2479946..2480575 within 0


Gene organization within MGE regions


Location: 2469160..2491749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6992_RS13625 yccA 2470296..2470955 (+) 660 WP_000375136.1 FtsH protease modulator YccA -
  C6992_RS13630 tusE 2471046..2471375 (+) 330 WP_001397075.1 sulfurtransferase TusE -
  C6992_RS13635 yccX 2471372..2471650 (-) 279 WP_000048233.1 acylphosphatase -
  C6992_RS13640 rlmI 2471745..2472935 (+) 1191 WP_000116288.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  C6992_RS13645 hspQ 2472993..2473310 (+) 318 WP_001295356.1 heat shock protein HspQ -
  C6992_RS13650 yccU 2473355..2473767 (-) 413 Protein_2534 CoA-binding protein -
  C6992_RS13655 yccT 2473940..2474602 (+) 663 WP_000847791.1 DUF2057 family protein -
  C6992_RS13660 mgsA 2474698..2475156 (+) 459 WP_000424181.1 methylglyoxal synthase -
  C6992_RS13665 helD 2475188..2477242 (-) 2055 WP_001397074.1 DNA helicase IV -
  C6992_RS13670 yccF 2477365..2477811 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C6992_RS13675 yccS 2477821..2479983 (+) 2163 WP_000875026.1 YccS family putative transporter -
  C6992_RS13680 sxy/tfoX 2479946..2480575 (-) 630 WP_000839145.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6992_RS13685 sulA 2480794..2481303 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6992_RS13695 ompA 2481660..2482700 (+) 1041 WP_000750416.1 porin OmpA -
  C6992_RS13700 matP 2482776..2483228 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6992_RS13705 ycbZ 2483414..2485174 (+) 1761 WP_032314553.1 Lon protease family protein -
  C6992_RS13710 fabA 2485243..2485761 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  C6992_RS13715 rmf 2485831..2485998 (-) 168 WP_000828648.1 ribosome modulation factor -
  C6992_RS13720 pqiC 2486254..2486817 (-) 564 WP_000759129.1 membrane integrity-associated transporter subunit PqiC -
  C6992_RS13725 pqiB 2486814..2488454 (-) 1641 WP_000445533.1 intermembrane transport protein PqiB -
  C6992_RS13730 pqiA 2488459..2489712 (-) 1254 WP_000333176.1 membrane integrity-associated transporter subunit PqiA -
  C6992_RS13735 uup 2489842..2491749 (-) 1908 WP_000053119.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24132.99 Da        Isoelectric Point: 9.2180

>NTDB_id=278037 C6992_RS13680 WP_000839145.1 2479946..2480575(-) (sxy/tfoX) [Escherichia coli strain 2014C-3061]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRDRLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=278037 C6992_RS13680 WP_000839145.1 2479946..2480575(-) (sxy/tfoX) [Escherichia coli strain 2014C-3061]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGATAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGTCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment