Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GTNG_RS06750 Genome accession   NC_009328
Coordinates   1344329..1345276 (+) Length   315 a.a.
NCBI ID   WP_008879449.1    Uniprot ID   A0A0Q0Z089
Organism   Geobacillus thermodenitrificans NG80-2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1339329..1350276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTNG_RS06740 (GTNG_1270) cysI 1340346..1342067 (+) 1722 WP_008879451.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  GTNG_RS06745 (GTNG_1271) gucD 1342326..1343789 (+) 1464 WP_008879450.1 alpha-ketoglutaric semialdehyde dehydrogenase GucD -
  GTNG_RS06750 (GTNG_1272) ceuB 1344329..1345276 (+) 948 WP_008879449.1 ABC transporter permease Machinery gene
  GTNG_RS06755 (GTNG_1273) - 1345269..1346219 (+) 951 WP_008879448.1 iron chelate uptake ABC transporter family permease subunit -
  GTNG_RS06760 (GTNG_1274) - 1346213..1346968 (+) 756 WP_008879447.1 ABC transporter ATP-binding protein -
  GTNG_RS06765 (GTNG_1275) - 1347224..1348183 (+) 960 WP_008879446.1 siderophore ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34684.55 Da        Isoelectric Point: 9.4613

>NTDB_id=27802 GTNG_RS06750 WP_008879449.1 1344329..1345276(+) (ceuB) [Geobacillus thermodenitrificans NG80-2]
MKKWVLLLFGLSLLSLFVGVHDLSPRALWEGDRDAWEIFLISRLPRLVSIIIAGASVSICGLIMQQLSQNKFVSPTTAGT
MDWARLGLLVSMILFASASPIVKAAIAVLFAFTGTLLFMTVLDRVKYKDSVFIPLVGLMFGNIIGSVTTFLAYKYDLIQS
VSAWLQGDFSVMMQGRYEMLYISVPLMAIAYAYANRFTIAGMGEEMATNLGLRYRSIVYTGLIIVAVTSSIEVLTVGSLP
FLGLIVPNIVTMYYGDHLRKVLPVTALAGALFVLVCDLFGRIVIYPYEIPIGLTVGVIGSGVFLYLLIRRTKQYV

Nucleotide


Download         Length: 948 bp        

>NTDB_id=27802 GTNG_RS06750 WP_008879449.1 1344329..1345276(+) (ceuB) [Geobacillus thermodenitrificans NG80-2]
ATGAAAAAATGGGTGTTGTTGCTTTTTGGATTATCGCTTCTTTCCTTATTTGTCGGGGTGCATGATTTATCCCCCCGTGC
GCTATGGGAGGGAGACCGTGATGCGTGGGAAATTTTCTTGATCAGCCGGTTGCCGCGGCTCGTCAGCATCATCATCGCTG
GGGCGAGCGTCAGCATTTGCGGCTTGATTATGCAACAGCTTAGTCAAAACAAATTCGTGTCGCCGACAACGGCGGGAACG
ATGGACTGGGCGCGGCTCGGGCTATTAGTGTCAATGATTTTGTTTGCCTCGGCCTCGCCGATCGTAAAGGCCGCCATTGC
TGTGTTGTTTGCGTTCACCGGAACATTGTTGTTTATGACGGTATTGGACCGTGTCAAGTATAAAGATTCGGTGTTCATTC
CGCTCGTCGGTCTCATGTTTGGTAATATCATCGGCTCGGTGACGACGTTTTTAGCGTATAAATATGATTTGATCCAATCG
GTTTCCGCTTGGCTGCAAGGCGATTTTTCGGTCATGATGCAAGGACGCTATGAGATGTTATACATTAGCGTCCCACTTAT
GGCGATCGCTTACGCGTACGCCAACCGATTTACCATCGCGGGCATGGGAGAAGAGATGGCCACGAATTTAGGGCTTCGTT
ACCGGTCGATTGTGTATACAGGACTGATCATTGTCGCGGTCACTTCATCGATTGAAGTGTTGACAGTCGGCTCCTTGCCG
TTTTTAGGGTTGATCGTTCCGAATATTGTGACGATGTATTACGGTGATCATTTACGCAAAGTGCTGCCGGTCACTGCGCT
TGCCGGGGCTTTGTTCGTGCTTGTTTGCGATCTGTTTGGTCGGATCGTCATTTATCCATACGAGATTCCGATCGGCTTAA
CGGTCGGGGTGATCGGGAGCGGCGTCTTTTTATATTTGCTTATAAGGAGAACGAAGCAATATGTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(8-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0Z089

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.318

99.683

0.502

Multiple sequence alignment