Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECOLC_RS18485 Genome accession   NC_010468
Coordinates   3759407..3759886 (+) Length   159 a.a.
NCBI ID   WP_000437750.1    Uniprot ID   -
Organism   Escherichia coli ATCC 8739     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3754407..3764886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECOLC_RS18440 (EcolC_3435) - 3754721..3755356 (+) 636 WP_000772020.1 hypothetical protein -
  ECOLC_RS18445 (EcolC_3436) - 3755392..3755844 (+) 453 WP_001020418.1 YfjS/YafY family lipoprotein -
  ECOLC_RS18450 (EcolC_3437) - 3755841..3756293 (+) 453 WP_000734138.1 hypothetical protein -
  ECOLC_RS18455 (EcolC_3438) - 3756356..3756898 (+) 543 WP_001104018.1 DUF4339 domain-containing protein -
  ECOLC_RS18460 (EcolC_3439) - 3756957..3757409 (+) 453 WP_001061894.1 IrmA family protein -
  ECOLC_RS18465 (EcolC_3440) - 3757486..3757719 (+) 234 WP_001114682.1 DUF905 domain-containing protein -
  ECOLC_RS18470 (EcolC_3441) - 3757839..3758657 (+) 819 WP_001234406.1 DUF932 domain-containing protein -
  ECOLC_RS18480 (EcolC_3442) - 3758925..3759395 (+) 471 WP_000131762.1 antirestriction protein -
  ECOLC_RS18485 (EcolC_3443) radC 3759407..3759886 (+) 480 WP_000437750.1 DNA repair protein RadC Machinery gene
  ECOLC_RS18490 (EcolC_3444) - 3759907..3760128 (+) 222 WP_000691981.1 DUF987 domain-containing protein -
  ECOLC_RS18495 (EcolC_3445) - 3760152..3760511 (+) 360 WP_000066236.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECOLC_RS18500 (EcolC_3446) - 3760562..3760939 (+) 378 WP_001194695.1 TA system toxin CbtA family protein -
  ECOLC_RS18505 (EcolC_3447) - 3760936..3761427 (+) 492 WP_000777682.1 DUF5983 family protein -
  ECOLC_RS18510 (EcolC_3448) - 3761459..3761662 (+) 204 WP_000413747.1 DUF957 domain-containing protein -
  ECOLC_RS18515 (EcolC_3449) - 3761743..3762587 (+) 845 Protein_3586 DUF4942 domain-containing protein -
  ECOLC_RS18525 (EcolC_3450) dnaQ 3762929..3763660 (-) 732 WP_001300756.1 DNA polymerase III subunit epsilon -
  ECOLC_RS18530 (EcolC_3451) rnhA 3763725..3764192 (+) 468 WP_000917883.1 ribonuclease HI -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17833.29 Da        Isoelectric Point: 6.5823

>NTDB_id=27801 ECOLC_RS18485 WP_000437750.1 3759407..3759886(+) (radC) [Escherichia coli ATCC 8739]
MEQQLPLFARELAPADQQTVRKALSLLECQLRETGASFTSSHAVRDWLRLQLASLEREEFTALFLDNQHRLIAHETLFTG
TINHTQVHPREVVKAGLKHNCAAVIVAHSHPSGEAEPSKADRQVTTRIQQALDLVDIRLLDHLVVGGMEITSFADRGWL

Nucleotide


Download         Length: 480 bp        

>NTDB_id=27801 ECOLC_RS18485 WP_000437750.1 3759407..3759886(+) (radC) [Escherichia coli ATCC 8739]
ATGGAGCAACAGTTACCGTTGTTTGCCCGTGAATTAGCCCCTGCCGACCAGCAGACAGTCAGGAAAGCCTTATCTCTGCT
GGAGTGCCAGCTACGTGAAACCGGCGCGTCATTTACTTCCAGCCATGCCGTCCGCGACTGGCTGCGCCTGCAGCTCGCGT
CACTGGAGCGGGAAGAGTTTACCGCGCTCTTTCTCGATAACCAGCATCGCCTGATAGCCCACGAAACGCTATTTACCGGC
ACCATCAACCATACGCAGGTCCATCCCCGCGAAGTGGTGAAGGCCGGTCTGAAGCATAACTGCGCCGCTGTCATTGTCGC
CCATAGCCATCCCTCCGGGGAGGCTGAACCCAGCAAGGCAGACCGTCAGGTCACTACGCGTATTCAGCAGGCGCTGGACC
TGGTTGATATCCGCTTGCTGGACCACCTGGTGGTCGGCGGCATGGAGATCACCTCGTTTGCAGATCGTGGCTGGCTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

51.724

72.956

0.377

Multiple sequence alignment