Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MJ68_RS26590 Genome accession   NZ_CP027544
Coordinates   4948616..4949245 (+) Length   209 a.a.
NCBI ID   WP_000839145.1    Uniprot ID   -
Organism   Escherichia coli strain 2013C-3264     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4943616..4954245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ68_RS26565 ycbZ 4944017..4945777 (-) 1761 WP_000156526.1 Lon protease family protein -
  MJ68_RS26570 matP 4945963..4946415 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  MJ68_RS26575 ompA 4946491..4947531 (-) 1041 WP_000750416.1 porin OmpA -
  MJ68_RS26585 sulA 4947888..4948397 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  MJ68_RS26590 sxy/tfoX 4948616..4949245 (+) 630 WP_000839145.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MJ68_RS26595 yccS 4949208..4951370 (-) 2163 WP_000875026.1 YccS family putative transporter -
  MJ68_RS26600 yccF 4951380..4951826 (-) 447 WP_001261235.1 YccF domain-containing protein -
  MJ68_RS26605 helD 4951949..4954003 (+) 2055 WP_001397074.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24132.99 Da        Isoelectric Point: 9.2180

>NTDB_id=278000 MJ68_RS26590 WP_000839145.1 4948616..4949245(+) (sxy/tfoX) [Escherichia coli strain 2013C-3264]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRDRLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=278000 MJ68_RS26590 WP_000839145.1 4948616..4949245(+) (sxy/tfoX) [Escherichia coli strain 2013C-3264]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGATAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGTCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment