Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GTNG_RS03930 Genome accession   NC_009328
Coordinates   781906..783729 (+) Length   607 a.a.
NCBI ID   WP_011886942.1    Uniprot ID   A4IL78
Organism   Geobacillus thermodenitrificans NG80-2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 776906..788729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTNG_RS03910 (GTNG_0698) - 777269..777937 (-) 669 WP_008878969.1 TerC family protein -
  GTNG_RS03915 (GTNG_0699) mecA 778154..778834 (+) 681 WP_008878968.1 adaptor protein MecA -
  GTNG_RS03920 (GTNG_0700) cls 778931..780439 (+) 1509 WP_008878967.1 cardiolipin synthase -
  GTNG_RS03925 (GTNG_0701) - 780587..781873 (+) 1287 WP_035498520.1 competence protein CoiA -
  GTNG_RS03930 (GTNG_0702) pepF 781906..783729 (+) 1824 WP_011886942.1 oligoendopeptidase F Regulator
  GTNG_RS03935 (GTNG_0703) - 783743..783940 (-) 198 WP_011886943.1 hypothetical protein -
  GTNG_RS03940 (GTNG_0704) spxH 784212..785105 (-) 894 WP_029761532.1 ClpXP adapter protein SpxH -
  GTNG_RS03945 (GTNG_0705) - 785098..785511 (-) 414 WP_008878963.1 globin -
  GTNG_RS03950 (GTNG_0706) - 785613..786221 (-) 609 WP_029761533.1 lytic transglycosylase domain-containing protein -
  GTNG_RS03955 (GTNG_0707) - 786221..786808 (-) 588 WP_008878961.1 CYTH domain-containing protein -
  GTNG_RS03960 (GTNG_0708) - 786943..787320 (+) 378 WP_008878960.1 hypothetical protein -
  GTNG_RS03965 (GTNG_0709) - 787448..788086 (+) 639 WP_029761535.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70281.13 Da        Isoelectric Point: 4.9488

>NTDB_id=27796 GTNG_RS03930 WP_011886942.1 781906..783729(+) (pepF) [Geobacillus thermodenitrificans NG80-2]
MTVEENKAKKSLPSRSEIPVEETWRLEDIFPTDDAWEQEFQQVKAMIPKISEYKGRLGESPEVMYEALQYQDEVSMRLGK
LYTYAHMRYDQDTTNSFYQGLDDRAKGLYSEASSAMAFIVPEILAIDEAVLRSFLEQYEPLRLYEHALDEITRQRPHVLS
AEEEALLAQAAEVMQATSSTFSALNNADLTFPTIRDENGDEVEVTHGRFIRFLESTDRRVRRDAFHAVYHTYEKFQNTFA
NTLAGTVKKDNFFARVRRYKSAREAALDANNIPESVYDNLIATIHEHLPLLHRYVRLRKSVLGLDELHMYDLYTPLVQDV
KMEVTYDEAKQYMLDGLAPLGEEYVSIVKEGLENRWVDVRENKGKRSGAYSSGAYGTHPYILLNWQDNVNNLFTLVHEFG
HSVHSYYTRKTQPYPYAHYSIFVAEVASTCNEALLNDYLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHLK
AQEGEALTAQTLTSLYYDLNKKYFGDDMVVDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYIE
FLKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLEEMERLLGK

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=27796 GTNG_RS03930 WP_011886942.1 781906..783729(+) (pepF) [Geobacillus thermodenitrificans NG80-2]
ATGACGGTGGAAGAGAATAAGGCAAAGAAATCGCTCCCGTCCCGGAGCGAAATCCCTGTCGAGGAAACGTGGCGGCTCGA
GGACATTTTCCCAACCGATGATGCGTGGGAACAGGAGTTTCAGCAAGTAAAGGCGATGATTCCAAAAATCAGCGAATACA
AAGGGCGGCTTGGCGAATCGCCGGAAGTGATGTATGAAGCGCTGCAATACCAAGATGAAGTATCGATGCGTCTCGGCAAG
CTGTATACATACGCCCATATGCGCTATGACCAAGACACGACGAACTCGTTTTACCAAGGGCTCGACGACAGGGCGAAAGG
GTTGTACAGCGAAGCATCGAGCGCGATGGCGTTTATCGTGCCGGAAATTTTGGCCATCGATGAAGCGGTGCTGCGTTCGT
TTTTAGAGCAATACGAACCGCTTCGGCTGTATGAGCACGCGTTAGACGAAATCACGCGCCAGCGCCCGCACGTCTTGTCC
GCTGAAGAAGAAGCGCTGTTGGCACAGGCTGCTGAGGTGATGCAGGCGACATCGTCGACGTTCAGTGCGTTAAACAACGC
TGACTTAACGTTCCCGACGATTCGCGACGAAAATGGGGATGAAGTGGAAGTGACGCACGGCCGGTTTATCCGATTTTTAG
AAAGTACCGACCGCCGCGTTCGTCGCGATGCGTTTCATGCAGTATACCATACGTACGAGAAGTTCCAGAACACGTTTGCC
AACACACTTGCGGGCACGGTGAAAAAAGACAACTTTTTCGCTCGCGTCCGCCGCTACAAATCAGCACGAGAAGCGGCGTT
AGATGCGAACAATATACCGGAAAGCGTCTATGATAATTTAATTGCCACAATTCATGAGCATTTACCGCTTTTGCACCGGT
ATGTGCGGCTGCGCAAAAGCGTACTAGGGCTTGACGAGCTGCATATGTATGACTTATATACTCCGCTCGTGCAAGATGTG
AAAATGGAAGTGACATACGACGAAGCGAAGCAATATATGCTTGACGGGTTGGCGCCGCTTGGCGAGGAATATGTGTCGAT
CGTCAAAGAAGGGCTTGAGAATCGATGGGTCGATGTGCGCGAAAATAAAGGAAAGCGAAGTGGAGCCTATTCGTCAGGAG
CGTATGGCACCCACCCGTATATTTTGCTGAACTGGCAAGATAATGTGAACAACTTGTTTACGCTCGTACATGAGTTCGGC
CACTCAGTCCATAGTTACTATACGCGCAAAACGCAGCCGTATCCGTATGCTCATTATTCGATTTTTGTCGCTGAAGTGGC
GTCGACATGCAATGAGGCATTGCTGAACGATTATTTGTTGAAAACGATCGATGATGAGAAAAAACGGCTATACTTGCTGA
ACCATTATCTTGAAGGATTCCGCGGTACCGTCTTTCGACAAACGATGTTTGCCGAATTCGAGCATTTGATCCATCTGAAG
GCGCAGGAGGGAGAGGCGCTGACAGCACAGACGCTCACATCGCTCTATTATGACCTGAACAAAAAATATTTCGGCGATGA
TATGGTGGTTGATGAGGAAATTGGTCTTGAATGGGCGCGCATCCCGCATTTTTATTACAACTATTACGTATATCAATACG
CGACCGGCTTCAGCGCGGCAACGGCGCTTAGCAAGCAGATTTTAGAGGAAGGCGAGCCGGCGGTGAAACGGTACATCGAG
TTTTTAAAAGCCGGAAGCTCTGATTATCCGATTGAGGTGCTGAAAAAAGCTGGCGTCGATATGACGAGCGCTGAACCGAT
TCGTCAAGCGTGTCAAGTGTTTGCAGAGAAGTTGGAAGAAATGGAGCGCTTGCTTGGAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(213-592)

Oligopeptidase F (Peptidase_M3_N)

(122-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4IL78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.01

97.858

0.499

Multiple sequence alignment