Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ECOLC_RS16905 Genome accession   NC_010468
Coordinates   3446550..3447155 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli ATCC 8739     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3441550..3452155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECOLC_RS16885 (EcolC_3140) aes 3441587..3442546 (+) 960 WP_000801866.1 acetyl esterase -
  ECOLC_RS16890 (EcolC_3141) hemH 3442543..3443505 (-) 963 WP_001250117.1 ferrochelatase -
  ECOLC_RS16895 (EcolC_3142) adk 3443741..3444385 (-) 645 WP_001220233.1 adenylate kinase -
  ECOLC_RS16900 (EcolC_3143) htpG 3444566..3446440 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  ECOLC_RS16905 (EcolC_3144) recR 3446550..3447155 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ECOLC_RS16910 (EcolC_3145) ybaB 3447155..3447484 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ECOLC_RS16915 (EcolC_3146) dnaX 3447537..3449468 (-) 1932 WP_000122010.1 DNA polymerase III subunit gamma/tau -
  ECOLC_RS16920 (EcolC_3147) apt 3449597..3450148 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ECOLC_RS16925 (EcolC_3148) ybaN 3450301..3450678 (-) 378 WP_001188905.1 DUF454 family protein -
  ECOLC_RS16930 (EcolC_3149) priC 3450748..3451275 (+) 528 WP_000844876.1 primosomal replication protein N'' -
  ECOLC_RS16935 (EcolC_3150) rsmS 3451289..3451450 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  ECOLC_RS26615 - 3451503..3451601 (-) 99 Protein_3277 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=27793 ECOLC_RS16905 WP_001195025.1 3446550..3447155(-) (recR) [Escherichia coli ATCC 8739]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=27793 ECOLC_RS16905 WP_001195025.1 3446550..3447155(-) (recR) [Escherichia coli ATCC 8739]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443