Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PA268_RS17705 Genome accession   NZ_CP032761
Coordinates   3655004..3655513 (-) Length   169 a.a.
NCBI ID   WP_023123041.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 268     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3650004..3660513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA268_RS17680 (PA268_17390) - 3650864..3651211 (-) 348 WP_023123036.1 DUF2958 domain-containing protein -
  PA268_RS17685 (PA268_17395) - 3651497..3651790 (+) 294 WP_023123037.1 helix-turn-helix transcriptional regulator -
  PA268_RS17690 (PA268_17400) - 3652029..3653126 (+) 1098 WP_023123038.1 nucleoid-associated protein -
  PA268_RS17695 (PA268_17405) - 3653123..3654109 (+) 987 WP_029885643.1 RelA/SpoT domain-containing protein -
  PA268_RS17700 (PA268_17410) - 3654127..3654873 (+) 747 WP_023123040.1 abortive infection family protein -
  PA268_RS17705 (PA268_17415) radC 3655004..3655513 (-) 510 WP_023123041.1 DNA repair protein RadC Machinery gene
  PA268_RS17710 (PA268_17420) - 3656056..3659031 (-) 2976 WP_023123042.1 TrlF family AAA-like ATPase -
  PA268_RS17715 (PA268_17425) - 3659342..3660481 (-) 1140 WP_023123043.1 PDDEXK nuclease domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18731.34 Da        Isoelectric Point: 6.2256

>NTDB_id=277889 PA268_RS17705 WP_023123041.1 3655004..3655513(-) (radC) [Pseudomonas aeruginosa strain 268]
MSQLSFSSFDDALLVRDAQGRYLPASVDQILEAARQAIEQKMQRGAEFTSPVLVKEYLRTKLVGFEHEVFAVLFLDTRHR
LIEYAEMFRGTIDSASVYPREVVKEALRLNAAAVIVSHNHPSGNPEPSGADRALTQQLTQALALVDVRVLDHVIVAGHTT
TSFAERGLI

Nucleotide


Download         Length: 510 bp        

>NTDB_id=277889 PA268_RS17705 WP_023123041.1 3655004..3655513(-) (radC) [Pseudomonas aeruginosa strain 268]
ATGTCGCAACTGTCCTTTTCCTCGTTCGATGACGCTTTGCTGGTGCGTGACGCCCAGGGGCGCTACCTGCCGGCATCGGT
GGATCAGATTCTTGAAGCGGCACGCCAGGCCATCGAGCAGAAGATGCAGCGCGGTGCCGAGTTTACTTCTCCAGTGCTGG
TCAAGGAGTACCTGCGCACCAAGCTGGTGGGCTTCGAGCATGAAGTCTTCGCGGTGTTGTTCCTGGACACGCGCCATCGG
CTGATTGAGTATGCCGAGATGTTCCGAGGCACCATCGACAGTGCGTCGGTGTATCCGCGCGAAGTGGTCAAGGAGGCGCT
GCGGCTCAATGCGGCAGCGGTCATCGTCAGCCACAACCATCCGAGTGGGAACCCGGAGCCGAGCGGCGCCGACCGGGCAC
TGACCCAGCAGCTCACGCAGGCGTTGGCGCTGGTGGACGTTCGCGTGCTGGATCATGTCATCGTGGCCGGTCACACGACG
ACATCGTTTGCCGAACGCGGCCTGATCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(49-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.143

82.84

0.391