Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   AM474_RS20590 Genome accession   NZ_CP027538
Coordinates   4262401..4262925 (-) Length   174 a.a.
NCBI ID   WP_003116261.1    Uniprot ID   Q7WZP2
Organism   Pseudomonas aeruginosa strain AR_0095     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4257401..4267925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM474_RS20575 (AM474_20575) - 4257485..4260961 (-) 3477 WP_034027586.1 pilus assembly protein -
  AM474_RS20580 (AM474_20580) - 4260975..4261580 (-) 606 WP_003116263.1 pilus assembly PilX family protein -
  AM474_RS20585 (AM474_20585) - 4261577..4262392 (-) 816 WP_034027589.1 PilW family protein -
  AM474_RS20590 (AM474_20590) pilV 4262401..4262925 (-) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  AM474_RS20595 (AM474_20595) - 4262935..4263423 (-) 489 WP_034027626.1 GspH/FimT family pseudopilin -
  AM474_RS20600 (AM474_20600) - 4263546..4264046 (-) 501 WP_016254062.1 GspH/FimT family pseudopilin -
  AM474_RS20605 (AM474_20605) thiO 4264186..4265280 (+) 1095 WP_033944813.1 glycine oxidase ThiO -
  AM474_RS20610 (AM474_20610) pilR 4265326..4266663 (-) 1338 WP_003110427.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18763.51 Da        Isoelectric Point: 4.9113

>NTDB_id=277864 AM474_RS20590 WP_003116261.1 4262401..4262925(-) (pilV) [Pseudomonas aeruginosa strain AR_0095]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=277864 AM474_RS20590 WP_003116261.1 4262401..4262925(-) (pilV) [Pseudomonas aeruginosa strain AR_0095]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WZP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598

Multiple sequence alignment