Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM460_RS20740 Genome accession   NZ_CP027534
Coordinates   3947502..3948131 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain AR_0081     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3942502..3953131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM460_RS20725 (AM460_20710) helD 3942744..3944798 (-) 2055 WP_001295938.1 DNA helicase IV -
  AM460_RS20730 (AM460_20715) yccF 3944921..3945367 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AM460_RS20735 (AM460_20720) yccS 3945377..3947539 (+) 2163 WP_000875041.1 YccS family putative transporter -
  AM460_RS20740 (AM460_20725) sxy/tfoX 3947502..3948131 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AM460_RS20745 (AM460_20730) sulA 3948350..3948859 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  AM460_RS20755 (AM460_20740) ompA 3949215..3950267 (+) 1053 WP_001346420.1 porin OmpA -
  AM460_RS20760 (AM460_20745) matP 3950343..3950795 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  AM460_RS20765 (AM460_20750) ycbZ 3950981..3952741 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=277841 AM460_RS20740 WP_000839151.1 3947502..3948131(-) (sxy/tfoX) [Escherichia coli strain AR_0081]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=277841 AM460_RS20740 WP_000839151.1 3947502..3948131(-) (sxy/tfoX) [Escherichia coli strain AR_0081]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment