Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   D8S77_RS03215 Genome accession   NZ_CP032700
Coordinates   625111..626772 (+) Length   553 a.a.
NCBI ID   WP_129321764.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY556     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 620111..631772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8S77_RS03185 (D8S77_03190) - 620400..621254 (+) 855 WP_129321762.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  D8S77_RS03190 (D8S77_03195) xseA 621407..622747 (+) 1341 WP_111674960.1 exodeoxyribonuclease VII large subunit -
  D8S77_RS03195 (D8S77_03200) - 622725..622940 (+) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  D8S77_RS03200 (D8S77_03205) - 622940..623812 (+) 873 WP_023611798.1 polyprenyl synthetase family protein -
  D8S77_RS03205 (D8S77_03210) - 623805..624632 (+) 828 WP_011054705.1 TlyA family RNA methyltransferase -
  D8S77_RS03210 (D8S77_03215) - 624619..625089 (+) 471 WP_002983907.1 arginine repressor -
  D8S77_RS03215 (D8S77_03220) recN 625111..626772 (+) 1662 WP_129321764.1 DNA repair protein RecN Machinery gene
  D8S77_RS03220 (D8S77_03225) - 626944..627894 (+) 951 WP_129321766.1 LPXTG cell wall anchor domain-containing protein -
  D8S77_RS03225 (D8S77_03230) - 628122..628961 (+) 840 WP_002989125.1 DegV family protein -
  D8S77_RS03230 (D8S77_03235) - 628954..629796 (+) 843 WP_002992620.1 SGNH/GDSL hydrolase family protein -
  D8S77_RS03235 (D8S77_03240) - 629774..630361 (+) 588 WP_010922482.1 YpmS family protein -
  D8S77_RS03240 (D8S77_03245) - 630460..630735 (+) 276 WP_002983920.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62213.42 Da        Isoelectric Point: 4.5840

>NTDB_id=277722 D8S77_RS03215 WP_129321764.1 625111..626772(+) (recN) [Streptococcus pyogenes strain TSPY556]
MLLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRRGANKAEIEGFFSVDATPELVACL
ESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKAFEQLKEN
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLVFQIAEIEAAALSRGEDDRLNQERDRLMNHKQIADTLTNAYVMLDNDD
FSSLSNIRSSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEIEFRLDILNSLTRKYGGNV
NDVLDYYDNIVKEYQLLTGDDLSSGDLEAELKSLEKQLVAAASELSVSRHQLAEQLEAEIKAELKELYMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTPEERVEEIASMIAGTDMTQAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=277722 D8S77_RS03215 WP_129321764.1 625111..626772(+) (recN) [Streptococcus pyogenes strain TSPY556]
ATGTTATTAGAAATTTCCATTAAAAATTTTGCTATTATTGATGAAATTTCCCTAAATTTTGAAAATGGTATGACGGTTTT
GACGGGTGAAACTGGAGCAGGAAAGTCTATTATCATTGATGCTATGAATATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGTCGTGGAGCTAATAAAGCAGAAATTGAGGGGTTCTTTTCGGTAGATGCTACCCCAGAACTGGTTGCGTGTCTG
GAATCATCAGGTATTGCTATGGAAGAAGAACTGATTATTCGCCGGGATATCTTTGCCAATGGCAGAAGCGTGAGCCGCAT
TAATGGTCAGATGGTTAACCTAGCCACCTTAAAACAGGTCGGACAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGCGACCACAGCTCCACCAGCAAATTTTGGACGCTTTTGGTGATAAGGCTTTTGAGCAATTGAAAGAGAAC
TATCAGCTTATTTTTGATCGTTATAAAAGCTTGCGTCGCCAGGTTATTGACAAACAAAAAAATGAAAAAGAACATAAAGA
TCGTATCGACATGTTGGTTTTTCAGATAGCGGAGATTGAAGCTGCTGCCTTGAGTCGAGGTGAGGACGACCGGTTAAATC
AAGAACGTGATCGCTTAATGAACCACAAACAAATTGCTGATACCCTGACCAATGCCTACGTCATGCTAGATAATGACGAT
TTTTCAAGTCTATCCAATATTCGCTCTAGCATGAATGACTTACTATCAATTGAGCAGTTTGATTCAGAGTACAAAGGGAT
GTCGACTTCGATTTCTGAAGCCTATTATATTCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAACTGGATT
TTGATGGTGGGCGATTACAGGAAATTGAATTTCGCTTGGATATACTCAATAGCTTAACTCGTAAATACGGTGGTAATGTG
AATGATGTGCTTGACTACTACGATAATATCGTCAAAGAATACCAGCTATTAACAGGAGATGACTTGTCTTCAGGGGATCT
AGAGGCAGAATTGAAAAGCTTGGAAAAACAATTGGTTGCTGCTGCTTCGGAGTTAAGTGTCTCTCGCCATCAATTGGCGG
AGCAATTAGAAGCTGAGATTAAAGCTGAACTTAAGGAACTTTATATGGAAAAAGCAGATTTCAAAGTTCACTTTACCACA
TCAAAATTTAATCGTGATGGTAATGAAAGCTTGGAATTTTACATCTCTACTAATCCAGGCGAAGGATTCAAGCCCCTTGT
CAAGGTGGCTTCTGGAGGAGAGTTATCACGCCTTATGTTAGCCATCAAGGCTGCTATTTCTAGAAAAGAAGATAAGACGA
GTATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGCGTTGCGCAAGCCATTGCCCAAAAAATTTATAAAATTGGG
CGACATGGGCAAGTTCTCGCTATTTCACACTTACCTCAAGTTATTGCTATTGCTGATTATCAGTATTTTATTTCTAAAGA
AAGTAAAGAAGAGTCCACCGTTTCTAAGGTAAGGTTATTAACTCCTGAAGAACGTGTGGAAGAAATTGCTAGCATGATTG
CAGGAACAGATATGACACAAGCTGCTCTTACGCAGGCTCGTGAACTACTTGCCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.014

100

0.452

Multiple sequence alignment