Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MSR1L_RS03730 Genome accession   NZ_CP027527
Coordinates   745982..747355 (-) Length   457 a.a.
NCBI ID   WP_106001564.1    Uniprot ID   -
Organism   Magnetospirillum gryphiswaldense strain R3/S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 740982..752355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSR1L_RS03710 (MSR1L_07430) - 741606..742880 (-) 1275 WP_024079743.1 hypothetical protein -
  MSR1L_RS03715 (MSR1L_07440) - 743067..743798 (-) 732 WP_106001563.1 SDR family NAD(P)-dependent oxidoreductase -
  MSR1L_RS03720 (MSR1L_07450) purF 743795..745255 (-) 1461 WP_024079740.1 amidophosphoribosyltransferase -
  MSR1L_RS03725 (MSR1L_07460) - 745276..745959 (-) 684 WP_024079739.1 CvpA family protein -
  MSR1L_RS03730 (MSR1L_07470) radA 745982..747355 (-) 1374 WP_106001564.1 DNA repair protein RadA Machinery gene
  MSR1L_RS03735 (MSR1L_07480) - 747389..749284 (-) 1896 WP_106001565.1 ATP-binding protein -
  MSR1L_RS03740 (MSR1L_07490) - 749287..750030 (-) 744 WP_106001566.1 substrate-binding periplasmic protein -
  MSR1L_RS03745 (MSR1L_07500) - 750124..750897 (-) 774 WP_106001567.1 ABC transporter ATP-binding protein -
  MSR1L_RS03750 (MSR1L_07510) - 750900..751673 (-) 774 WP_024079734.1 MlaE family ABC transporter permease -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 47547.03 Da        Isoelectric Point: 7.9207

>NTDB_id=277696 MSR1L_RS03730 WP_106001564.1 745982..747355(-) (radA) [Magnetospirillum gryphiswaldense strain R3/S1]
MSKSSARFVCQECGAVTVKWAGKCETCGAWNSIAEEAPRENAPKGLGGKAGRKIEFVGLEGQAAPVPRLMTGIGELDRVA
GGGLVPGSALLVGGDPGIGKSTLLTQAAAQLSAKHAVVYISGEEAVDQVRLRARRMGLANAPVQLAAATSLRDIVSTLDV
ADAPAVVVIDSIQTMFADTVESAPGTVTQVRTCAHELIRLAKRRGFVLFLVGHVTKEGTIAGPRVLEHMVDTVLYFEGER
GHQFRILRAVKNRFGATDEIGVFEMTDAGLAEVLNPSALFLAERRGNVSGSCVFAGIEGTRPMLVEIQALVAPSTLSSPR
RAVVGWDTSRLAMVLAVLDARCGLALSGNDVYLNVAGGLRIAEPAADLAVAAALVSSASDIPVPADMVVFGEIGLSGEVR
AVAQTELRLKEAAKLGFAQGLVPAMPRKGKGPVATGALGIRPLGHLQDLLGLFRPAS

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=277696 MSR1L_RS03730 WP_106001564.1 745982..747355(-) (radA) [Magnetospirillum gryphiswaldense strain R3/S1]
ATGTCCAAATCATCCGCCCGTTTCGTCTGCCAGGAATGCGGCGCCGTCACCGTCAAATGGGCGGGCAAATGCGAGACCTG
CGGCGCCTGGAACTCCATCGCCGAGGAAGCCCCGCGTGAGAACGCGCCCAAGGGCTTGGGTGGCAAGGCCGGACGCAAGA
TCGAATTCGTCGGCCTGGAAGGTCAGGCCGCCCCGGTGCCGCGACTGATGACCGGCATCGGCGAGTTGGACCGGGTGGCC
GGCGGCGGGCTGGTGCCCGGTTCGGCCCTCCTGGTCGGCGGCGATCCCGGCATCGGCAAGTCGACGCTGCTGACCCAGGC
GGCGGCCCAGCTTTCGGCCAAGCATGCGGTGGTCTACATCTCGGGCGAAGAGGCGGTCGATCAGGTGCGCCTGCGCGCCC
GGCGCATGGGGCTAGCCAACGCTCCCGTGCAACTGGCCGCCGCCACGTCCTTGCGCGATATCGTCTCGACCCTGGACGTG
GCCGACGCCCCCGCCGTGGTGGTCATCGATTCCATCCAGACCATGTTCGCCGACACGGTGGAATCGGCACCGGGCACCGT
CACCCAGGTGCGCACCTGCGCCCATGAACTGATCCGTCTGGCCAAACGGCGCGGCTTCGTCCTGTTCCTGGTCGGCCACG
TCACCAAGGAAGGCACCATCGCCGGCCCCCGCGTGCTGGAACACATGGTCGACACCGTGCTTTATTTCGAGGGCGAGCGC
GGCCACCAGTTCCGCATCTTGCGCGCCGTCAAGAACCGCTTCGGCGCCACCGACGAAATCGGCGTGTTCGAGATGACCGA
TGCCGGACTGGCGGAAGTGCTGAACCCGTCGGCGCTGTTTTTGGCCGAACGGCGCGGCAATGTCTCGGGTTCCTGCGTCT
TCGCCGGCATCGAGGGGACGCGCCCCATGCTGGTGGAAATCCAGGCCCTGGTCGCCCCCAGTACCCTGTCGTCGCCCCGG
CGCGCCGTGGTCGGCTGGGATACCAGCCGCCTCGCCATGGTGCTGGCGGTGCTCGATGCCCGTTGCGGACTTGCTTTGTC
GGGCAATGACGTTTATTTGAACGTCGCAGGCGGCTTGCGTATCGCCGAACCCGCCGCCGATCTGGCGGTGGCCGCCGCCC
TGGTCTCGTCGGCCAGCGATATCCCGGTTCCCGCCGATATGGTGGTGTTCGGGGAAATCGGACTTTCGGGCGAGGTTCGC
GCCGTGGCGCAGACCGAGCTACGCCTGAAGGAAGCGGCGAAACTTGGCTTCGCGCAGGGGCTGGTGCCCGCGATGCCGAG
AAAGGGCAAAGGTCCAGTGGCCACGGGGGCACTGGGCATTCGCCCGTTAGGGCACCTGCAGGATTTGTTGGGGCTGTTCC
GCCCCGCCTCGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-218)

Subunit ChlI of Mg-chelatase (ChlI)

(342-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.945

95.624

0.497
  radA Streptococcus mitis NCTC 12261

48.506

95.186

0.462
  radA Streptococcus mitis SK321

48.506

95.186

0.462
  radA Streptococcus pneumoniae Rx1

49.061

93.217

0.457
  radA Streptococcus pneumoniae D39

49.061

93.217

0.457
  radA Streptococcus pneumoniae R6

49.061

93.217

0.457
  radA Streptococcus pneumoniae TIGR4

49.061

93.217

0.457

Multiple sequence alignment