Detailed information NTG0027762

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ECOLC_RS05180
• Genome accession: NC_010468
• Coordinates: 1056333..1057325 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli ATCC 8739
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1051333..1062325

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECOLC_RS05150 (EcolC_0965)	ispD	1051394..1052104 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ECOLC_RS05155 (EcolC_0966)	ispF	1052104..1052583 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ECOLC_RS05160 (EcolC_0967)	truD	1052580..1053629 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
ECOLC_RS05165 (EcolC_0968)	surE	1053610..1054371 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ECOLC_RS05170 (EcolC_0969)	pcm	1054365..1054991 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ECOLC_RS05175 (EcolC_0970)	nlpD	1055176..1056270 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ECOLC_RS05180 (EcolC_0971)	rpoS	1056333..1057325 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ECOLC_RS05185 (EcolC_0972)	ygbN	1057419..1058783 (-)	1365	WP_000104462.1	GntP family transporter	-
ECOLC_RS05190 (EcolC_0973)	ygbM	1058872..1059648 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
ECOLC_RS05195 (EcolC_0974)	ygbL	1059653..1060291 (-)	639	WP_001278994.1	aldolase	-
ECOLC_RS05200 (EcolC_0975)	otnK	1060288..1061550 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=27762 ECOLC_RS05180 WP_000081550.1 1056333..1057325(+) (rpoS) [Escherichia coli ATCC 8739]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=27762 ECOLC_RS05180 WP_000081550.1 1056333..1057325(+) (rpoS) [Escherichia coli ATCC 8739]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715