Detailed information NTG0277545

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: D7U33_RS13970
• Genome accession: NZ_CP032679
• Coordinates: 2866562..2867554 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli str. K-12 substr. MG1655 strain K-12
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2861562..2872554

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D7U33_RS13950 (D7U33_14230)	otnK	2862338..2863504 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
D7U33_RS13955 (D7U33_14235)	ygbL	2863596..2864234 (+)	639	WP_001278994.1	aldolase	-
D7U33_RS13960 (D7U33_14240)	ygbM	2864239..2865015 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
D7U33_RS13965 (D7U33_14245)	ygbN	2865104..2866468 (+)	1365	WP_000104441.1	GntP family transporter	-
D7U33_RS13970 (D7U33_14250)	rpoS	2866562..2867554 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
D7U33_RS13975 (D7U33_14255)	nlpD	2867617..2868711 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
D7U33_RS13980 (D7U33_14260)	pcm	2868896..2869522 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
D7U33_RS13985 (D7U33_14265)	surE	2869516..2870277 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
D7U33_RS13990 (D7U33_14270)	truD	2870258..2871307 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
D7U33_RS13995 (D7U33_14275)	ispF	2871304..2871783 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
D7U33_RS14000 (D7U33_14280)	ispD	2871783..2872493 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=277545 D7U33_RS13970 WP_000081588.1 2866562..2867554(-) (rpoS) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=277545 D7U33_RS13970 WP_000081588.1 2866562..2867554(-) (rpoS) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715