Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D7U33_RS13505 Genome accession   NZ_CP032679
Coordinates   2776389..2776871 (+) Length   160 a.a.
NCBI ID   WP_001407480.1    Uniprot ID   P52140
Organism   Escherichia coli str. K-12 substr. MG1655 strain K-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2771389..2781871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7U33_RS22495 - 2772005..2772157 (-) 153 Protein_2669 glutaredoxin domain-containing protein -
  D7U33_RS13485 (D7U33_13765) - 2772170..2773185 (-) 1016 Protein_2670 arsenic transporter -
  D7U33_RS13490 (D7U33_13770) yfjW 2773321..2775024 (+) 1704 WP_000896263.1 protein YfjW -
  D7U33_RS13495 (D7U33_13775) - 2775659..2775819 (+) 161 Protein_2672 DUF905 family protein -
  D7U33_RS13500 (D7U33_13780) lfgA 2775922..2776380 (+) 459 WP_000211841.1 antirestriction protein -
  D7U33_RS13505 (D7U33_13785) radC 2776389..2776871 (+) 483 WP_001407480.1 JAB domain-containing protein Machinery gene
  D7U33_RS13510 (D7U33_13790) ypjJ 2776880..2777080 (+) 201 WP_001395452.1 DUF987 domain-containing protein -
  D7U33_RS13515 (D7U33_13795) yfjZ 2777118..2777435 (+) 318 WP_000072690.1 type IV toxin-antitoxin system YeeU family antitoxin -
  D7U33_RS13520 (D7U33_13800) ypjF 2777456..2777785 (+) 330 WP_001094400.1 type IV toxin-antitoxin system toxin YpjF -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17963.75 Da        Isoelectric Point: 8.6079

>NTDB_id=277541 D7U33_RS13505 WP_001407480.1 2776389..2776871(+) (radC) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MMEQSLIPQTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMMLYLNQQNQLIAHETLFA
GSISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 483 bp        

>NTDB_id=277541 D7U33_RS13505 WP_001407480.1 2776389..2776871(+) (radC) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCT
GCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGG
CGGGGCTGGAGCGTGAAGAATTTATGATGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCC
GGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGATACT
GGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTC
AGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTT
TGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(40-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52140

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65

0.375