Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D7U33_RS10225 Genome accession   NZ_CP032679
Coordinates   2076313..2076759 (+) Length   148 a.a.
NCBI ID   WP_000187523.1    Uniprot ID   P76362
Organism   Escherichia coli str. K-12 substr. MG1655 strain K-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2071313..2081759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7U33_RS10215 (D7U33_10415) agn43 2071544..2074663 (+) 3120 WP_000820410.1 autotransporter adhesin Ag43 -
  D7U33_RS10220 (D7U33_10420) yeeR 2074784..2076316 (+) 1533 WP_001350525.1 protein YeeR -
  D7U33_RS10225 (D7U33_10425) radC 2076313..2076759 (+) 447 WP_000187523.1 JAB domain-containing protein Machinery gene
  D7U33_RS10230 (D7U33_10430) yeeT 2076822..2077043 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  D7U33_RS10235 (D7U33_10435) cbeA 2077117..2077485 (+) 369 WP_001285584.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  D7U33_RS10240 (D7U33_10440) cbtA 2077574..2077948 (+) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  D7U33_RS10245 (D7U33_10445) yeeW 2077945..2078139 (+) 195 WP_000988600.1 DUF5983 family protein -
  D7U33_RS10250 (D7U33_10450) - 2078173..2078265 (+) 93 Protein_2031 DUF957 domain-containing protein -
  D7U33_RS10255 (D7U33_10455) - 2078554..2078682 (-) 129 Protein_2032 transposase domain-containing protein -
  D7U33_RS10260 (D7U33_10460) - 2078754..2078936 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  D7U33_RS10265 (D7U33_10465) tmaR 2079037..2079366 (-) 330 WP_000450409.1 DUF496 family protein -
  D7U33_RS10270 (D7U33_10470) yeeA 2079538..2080596 (-) 1059 WP_001200891.1 FUSC family protein -
  D7U33_RS10275 (D7U33_10475) sbmC 2080794..2081267 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16556.98 Da        Isoelectric Point: 7.6151

>NTDB_id=277530 D7U33_RS10225 WP_000187523.1 2076313..2076759(+) (radC) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=277530 D7U33_RS10225 WP_000187523.1 2076313..2076759(+) (radC) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(28-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P76362

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

76.351

0.419