Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D8B36_RS17970 Genome accession   NZ_CP032667
Coordinates   3617570..3618046 (+) Length   158 a.a.
NCBI ID   WP_000811693.1    Uniprot ID   A0AA91EE93
Organism   Escherichia coli str. K-12 substr. MG1655 strain K-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3612570..3623046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8B36_RS17930 (D8B36_17930) ykfA 3613342..3614205 (+) 864 WP_001065553.1 GTPase family protein -
  D8B36_RS17935 (D8B36_17935) yafZ 3614297..3615118 (+) 822 WP_000197389.1 DUF932 domain-containing protein -
  D8B36_RS17940 (D8B36_17940) - 3615335..3615535 (+) 201 Protein_3468 DeoR family transcriptional regulator -
  D8B36_RS17945 (D8B36_17945) ypjK 3615510..3615749 (+) 240 WP_032243554.1 protein YpjK -
  D8B36_RS17950 (D8B36_17950) yafY 3615749..3616192 (+) 444 WP_000824223.1 YfjS/YafY family lipoprotein -
  D8B36_RS17955 (D8B36_17955) ykfB 3616215..3616682 (+) 468 WP_001547765.1 protein YkfB -
  D8B36_RS17960 (D8B36_17960) ykfF 3616759..3616998 (+) 240 WP_000194654.1 DUF905 domain-containing protein -
  D8B36_RS17965 (D8B36_17965) yafX 3617096..3617554 (+) 459 WP_000211838.1 antirestriction protein -
  D8B36_RS17970 (D8B36_17970) radC 3617570..3618046 (+) 477 WP_000811693.1 JAB domain-containing protein Machinery gene
  D8B36_RS17975 (D8B36_17975) ykfH 3618055..3618276 (+) 222 WP_000691994.1 DUF987 domain-containing protein -
  D8B36_RS17980 (D8B36_17980) yafW 3618295..3618612 (+) 318 WP_000070395.1 type IV toxin-antitoxin system antitoxin YafW -
  D8B36_RS17985 (D8B36_17985) ykfI 3618633..3618974 (+) 342 WP_000854672.1 type IV toxin-antitoxin system toxin YkfI -
  D8B36_RS17995 (D8B36_17995) proA 3619546..3620799 (-) 1254 WP_000893278.1 glutamate-5-semialdehyde dehydrogenase -
  D8B36_RS18000 (D8B36_18000) proB 3620811..3621914 (-) 1104 WP_001285288.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18098.78 Da        Isoelectric Point: 8.7508

>NTDB_id=277481 D8B36_RS17970 WP_000811693.1 3617570..3618046(+) (radC) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGT
INRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=277481 D8B36_RS17970 WP_000811693.1 3617570..3618046(+) (radC) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACAGGACCGGCGTCTCATTCAGCGGGCGCTCAGGGCTCTGGA
CCGCCACCTGCATGAGCCCGGCGTAGCCTTCACCTCTACCCACGCCGTACGTGAATGGCTGCGACTGCATATGGCCGCGC
TTGAGCGGGAAGAGTTCCGGGTGTTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACCGCACCGAGGTGCATCCCCGGGAGGTGGTCAAACGTGCTCTGCACTTCAACGCGGCGGCGGTGATACTCGCGCA
TAACCATCCTTCCGGCGAGACGACACCTAGCCAGGCCGACAAAACCCTCACGCAGCGACTGGTTCAGGTGCTTCAGCTGG
TGGATATCCGTGTCCCTGACCATCTGATTGTCGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA91EE93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38