Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D8B36_RS08790 Genome accession   NZ_CP032667
Coordinates   1806618..1807064 (-) Length   148 a.a.
NCBI ID   WP_000187523.1    Uniprot ID   P76362
Organism   Escherichia coli str. K-12 substr. MG1655 strain K-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1801618..1812064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8B36_RS08740 (D8B36_08740) sbmC 1802110..1802583 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  D8B36_RS08745 (D8B36_08745) yeeA 1802781..1803839 (+) 1059 WP_001200891.1 FUSC family protein -
  D8B36_RS08750 (D8B36_08750) tmaR 1804011..1804340 (+) 330 WP_000450409.1 DUF496 family protein -
  D8B36_RS08755 (D8B36_08755) - 1804441..1804623 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  D8B36_RS08760 (D8B36_08760) - 1804695..1804823 (+) 129 Protein_1684 transposase domain-containing protein -
  D8B36_RS08765 (D8B36_08765) - 1805112..1805204 (-) 93 Protein_1685 DUF957 domain-containing protein -
  D8B36_RS08770 (D8B36_08770) yeeW 1805238..1805432 (-) 195 WP_000988600.1 DUF5983 family protein -
  D8B36_RS08775 (D8B36_08775) cbtA 1805429..1805803 (-) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  D8B36_RS08780 (D8B36_08780) cbeA 1805892..1806260 (-) 369 WP_001285584.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  D8B36_RS08785 (D8B36_08785) yeeT 1806334..1806555 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  D8B36_RS08790 (D8B36_08790) radC 1806618..1807064 (-) 447 WP_000187523.1 JAB domain-containing protein Machinery gene
  D8B36_RS08795 (D8B36_08795) yeeR 1807061..1808593 (-) 1533 WP_001350525.1 protein YeeR -
  D8B36_RS08800 (D8B36_08800) agn43 1808714..1811833 (-) 3120 WP_000820410.1 autotransporter adhesin Ag43 -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16556.98 Da        Isoelectric Point: 7.6151

>NTDB_id=277457 D8B36_RS08790 WP_000187523.1 1806618..1807064(-) (radC) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=277457 D8B36_RS08790 WP_000187523.1 1806618..1807064(-) (radC) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(28-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P76362

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

76.351

0.419