Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D8B36_RS05430 Genome accession   NZ_CP032667
Coordinates   1106506..1106988 (-) Length   160 a.a.
NCBI ID   WP_001407480.1    Uniprot ID   P52140
Organism   Escherichia coli str. K-12 substr. MG1655 strain K-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1101506..1111988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8B36_RS05415 (D8B36_05415) ypjF 1105592..1105921 (-) 330 WP_001094400.1 type IV toxin-antitoxin system toxin YpjF -
  D8B36_RS05420 (D8B36_05420) yfjZ 1105942..1106259 (-) 318 WP_000072690.1 type IV toxin-antitoxin system YeeU family antitoxin -
  D8B36_RS05425 (D8B36_05425) ypjJ 1106297..1106497 (-) 201 WP_001395452.1 DUF987 domain-containing protein -
  D8B36_RS05430 (D8B36_05430) radC 1106506..1106988 (-) 483 WP_001407480.1 JAB domain-containing protein Machinery gene
  D8B36_RS05435 (D8B36_05435) lfgA 1106997..1107455 (-) 459 WP_000211841.1 antirestriction protein -
  D8B36_RS05440 (D8B36_05440) - 1107558..1107718 (-) 161 Protein_1044 DUF905 family protein -
  D8B36_RS05445 (D8B36_05445) yfjW 1108353..1110056 (-) 1704 WP_000896263.1 protein YfjW -
  D8B36_RS05450 (D8B36_05450) - 1110192..1111207 (+) 1016 Protein_1046 arsenic transporter -
  D8B36_RS23415 - 1111220..1111372 (+) 153 Protein_1047 glutaredoxin domain-containing protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17963.75 Da        Isoelectric Point: 8.6079

>NTDB_id=277446 D8B36_RS05430 WP_001407480.1 1106506..1106988(-) (radC) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MMEQSLIPQTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMMLYLNQQNQLIAHETLFA
GSISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 483 bp        

>NTDB_id=277446 D8B36_RS05430 WP_001407480.1 1106506..1106988(-) (radC) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCT
GCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGG
CGGGGCTGGAGCGTGAAGAATTTATGATGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCC
GGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGATACT
GGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTC
AGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTT
TGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(40-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52140

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65

0.375