Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6W75_RS15305 Genome accession   NZ_CP027462
Coordinates   2890124..2890753 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate 07-4299     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2885124..2895753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W75_RS15290 helD 2885366..2887420 (-) 2055 WP_001315388.1 DNA helicase IV -
  C6W75_RS15295 yccF 2887543..2887989 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C6W75_RS15300 yccS 2887999..2890161 (+) 2163 WP_000875044.1 YccS family putative transporter -
  C6W75_RS15305 sxy/tfoX 2890124..2890753 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6W75_RS15310 sulA 2890972..2891481 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6W75_RS15320 ompA 2891838..2892890 (+) 1053 WP_000750419.1 porin OmpA -
  C6W75_RS15325 matP 2892965..2893417 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  C6W75_RS15330 ycbZ 2893603..2895363 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=277432 C6W75_RS15305 WP_000839153.1 2890124..2890753(-) (sxy/tfoX) [Escherichia coli isolate 07-4299]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=277432 C6W75_RS15305 WP_000839153.1 2890124..2890753(-) (sxy/tfoX) [Escherichia coli isolate 07-4299]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment