Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6W76_RS12315 Genome accession   NZ_CP027459
Coordinates   2203006..2203635 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 90-3040     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2198006..2208635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W76_RS12300 helD 2198248..2200302 (-) 2055 WP_032206206.1 DNA helicase IV -
  C6W76_RS12305 yccF 2200425..2200871 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C6W76_RS12310 yccS 2200881..2203043 (+) 2163 WP_074433556.1 YccS family putative transporter -
  C6W76_RS12315 sxy/tfoX 2203006..2203635 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6W76_RS12320 sulA 2203854..2204363 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6W76_RS12330 ompA 2204720..2205760 (+) 1041 WP_000750416.1 porin OmpA -
  C6W76_RS12335 matP 2205836..2206288 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6W76_RS12340 ycbZ 2206474..2208234 (+) 1761 WP_032206208.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=277382 C6W76_RS12315 WP_000839153.1 2203006..2203635(-) (sxy/tfoX) [Escherichia coli strain 90-3040]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=277382 C6W76_RS12315 WP_000839153.1 2203006..2203635(-) (sxy/tfoX) [Escherichia coli strain 90-3040]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment