Detailed information    

insolico Bioinformatically predicted

Overview

Name   MMJJ_RS05685   Type   Machinery gene
Locus tag   MMARC5_RS05455 Genome accession   NC_009135
Coordinates   1034901..1035122 (+) Length   73 a.a.
NCBI ID   WP_011868834.1    Uniprot ID   A4FYU7
Organism   Methanococcus maripaludis C5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1029901..1040122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMARC5_RS05430 - 1030516..1030746 (-) 231 WP_048058483.1 hypothetical protein -
  MMARC5_RS05435 (MmarC5_1075) - 1030752..1031321 (-) 570 WP_011868830.1 hypothetical protein -
  MMARC5_RS05440 (MmarC5_1076) - 1031480..1031989 (-) 510 WP_011868831.1 HEPN domain-containing protein -
  MMARC5_RS05445 (MmarC5_1077) - 1031976..1032593 (-) 618 WP_011868832.1 nucleotidyltransferase domain-containing protein -
  MMARC5_RS05450 (MmarC5_1078) - 1032830..1034488 (+) 1659 WP_011868833.1 SulP family inorganic anion transporter -
  MMARC5_RS05455 (MmarC5_1079) MMJJ_RS05685 1034901..1035122 (+) 222 WP_011868834.1 class III signal peptide-containing protein Machinery gene
  MMARC5_RS05460 (MmarC5_1080) - 1035123..1035746 (-) 624 WP_011868835.1 MarR family transcriptional regulator -
  MMARC5_RS05465 (MmarC5_1081) - 1035762..1036487 (-) 726 WP_011868836.1 hypothetical protein -
  MMARC5_RS05475 (MmarC5_1082) - 1036993..1037439 (+) 447 WP_011868837.1 hypothetical protein -
  MMARC5_RS05480 (MmarC5_1083) - 1037479..1038048 (+) 570 WP_011868838.1 hypothetical protein -
  MMARC5_RS05485 (MmarC5_1084) - 1038241..1038945 (+) 705 WP_011868839.1 ABC transporter ATP-binding protein -
  MMARC5_RS05490 (MmarC5_1085) - 1038950..1039978 (+) 1029 WP_011868840.1 COG1361 S-layer family protein -

Sequence

Protein


Download         Length: 73 a.a.        Molecular weight: 7740.00 Da        Isoelectric Point: 8.0194

>NTDB_id=27733 MMARC5_RS05455 WP_011868834.1 1034901..1035122(+) (MMJJ_RS05685) [Methanococcus maripaludis C5]
MLKKLYSKKGQVSMEIGILVGASVAVATIASYFYVVHVKYSDTHAGETAKNMSDALLNVTGTVCGNISEITIT

Nucleotide


Download         Length: 222 bp        

>NTDB_id=27733 MMARC5_RS05455 WP_011868834.1 1034901..1035122(+) (MMJJ_RS05685) [Methanococcus maripaludis C5]
ATGTTAAAAAAATTATATTCAAAAAAAGGACAGGTTTCGATGGAAATTGGGATTTTAGTCGGGGCTTCTGTTGCAGTAGC
TACGATTGCAAGCTATTTTTATGTAGTACATGTTAAATATTCAGATACTCATGCGGGTGAAACTGCAAAAAACATGAGTG
ATGCCTTATTAAACGTTACAGGAACGGTTTGTGGCAACATTTCTGAAATAACAATTACATAA

Domains

Predicted by InterproScan.

Class III signal peptide (Class_IIIsignal)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4FYU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  MMJJ_RS05685 Methanococcus maripaludis strain DSM 2067

52.055

100

0.521

Multiple sequence alignment