Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6W71_RS01295 Genome accession   NZ_CP027452
Coordinates   218271..218900 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2014C-3338     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 213271..223900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W71_RS01280 helD 213513..215567 (-) 2055 WP_106889354.1 DNA helicase IV -
  C6W71_RS01285 yccF 215690..216136 (+) 447 WP_001261236.1 YccF domain-containing protein -
  C6W71_RS01290 yccS 216146..218308 (+) 2163 WP_000875041.1 YccS family putative transporter -
  C6W71_RS01295 sxy/tfoX 218271..218900 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6W71_RS01300 sulA 219119..219628 (+) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  C6W71_RS01310 ompA 219985..221025 (+) 1041 WP_001314606.1 porin OmpA -
  C6W71_RS01315 matP 221101..221553 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6W71_RS01320 ycbZ 221739..223499 (+) 1761 WP_000156476.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=277310 C6W71_RS01295 WP_000839153.1 218271..218900(-) (sxy/tfoX) [Escherichia coli strain 2014C-3338]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=277310 C6W71_RS01295 WP_000839153.1 218271..218900(-) (sxy/tfoX) [Escherichia coli strain 2014C-3338]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment