Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6W73_RS00940 Genome accession   NZ_CP027449
Coordinates   162669..163298 (-) Length   209 a.a.
NCBI ID   WP_106879088.1    Uniprot ID   -
Organism   Escherichia coli strain 2014C-3097     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 157669..168298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W73_RS00925 helD 157911..159965 (-) 2055 WP_000420533.1 DNA helicase IV -
  C6W73_RS00930 yccF 160088..160534 (+) 447 WP_001261231.1 YccF domain-containing protein -
  C6W73_RS00935 yccS 160544..162706 (+) 2163 WP_000875044.1 YccS family putative transporter -
  C6W73_RS00940 sxy/tfoX 162669..163298 (-) 630 WP_106879088.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6W73_RS00945 sulA 163517..164026 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6W73_RS00955 ompA 164383..165435 (+) 1053 WP_000750419.1 porin OmpA -
  C6W73_RS00960 matP 165510..165962 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  C6W73_RS00965 ycbZ 166148..167908 (+) 1761 WP_106879087.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24102.98 Da        Isoelectric Point: 9.0428

>NTDB_id=277288 C6W73_RS00940 WP_106879088.1 162669..163298(-) (sxy/tfoX) [Escherichia coli strain 2014C-3097]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSCHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=277288 C6W73_RS00940 WP_106879088.1 162669..163298(-) (sxy/tfoX) [Escherichia coli strain 2014C-3097]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTGTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment