Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6W72_RS01515 Genome accession   NZ_CP027447
Coordinates   297001..297630 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2014C-3075     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 292001..302630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W72_RS01490 ycbZ 292391..294151 (-) 1761 WP_096986472.1 Lon protease family protein -
  C6W72_RS01495 matP 294337..294789 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  C6W72_RS01500 ompA 294865..295917 (-) 1053 WP_001563012.1 porin OmpA -
  C6W72_RS01510 sulA 296274..296783 (-) 510 WP_000288691.1 SOS-induced cell division inhibitor SulA -
  C6W72_RS01515 sxy/tfoX 297001..297630 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6W72_RS01520 yccS 297593..299755 (-) 2163 WP_147590297.1 YccS family putative transporter -
  C6W72_RS01525 yccF 299765..300211 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C6W72_RS01530 helD 300334..302388 (+) 2055 WP_096944029.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=277267 C6W72_RS01515 WP_000839153.1 297001..297630(+) (sxy/tfoX) [Escherichia coli strain 2014C-3075]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=277267 C6W72_RS01515 WP_000839153.1 297001..297630(+) (sxy/tfoX) [Escherichia coli strain 2014C-3075]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCTGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment