Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SHEW_RS17780 Genome accession   NC_009092
Coordinates   4107121..4108389 (+) Length   422 a.a.
NCBI ID   WP_011867235.1    Uniprot ID   A3QIK7
Organism   Shewanella loihica PV-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4102121..4113389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHEW_RS21030 (Shew_3436) - 4103142..4103495 (+) 354 WP_011867232.1 type IV pilin protein -
  SHEW_RS17770 (Shew_3437) - 4103663..4105033 (-) 1371 WP_011867233.1 O-antigen ligase -
  SHEW_RS17775 (Shew_3438) pilB 4105375..4107084 (+) 1710 WP_011867234.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SHEW_RS17780 (Shew_3439) pilC 4107121..4108389 (+) 1269 WP_011867235.1 type II secretion system F family protein Machinery gene
  SHEW_RS17785 (Shew_3440) pilD 4108428..4109339 (+) 912 WP_011867236.1 A24 family peptidase Machinery gene
  SHEW_RS17790 (Shew_3441) coaE 4109360..4109965 (+) 606 WP_011867237.1 dephospho-CoA kinase -
  SHEW_RS17795 (Shew_3442) zapD 4109974..4110708 (+) 735 WP_011867238.1 cell division protein ZapD -
  SHEW_RS17800 (Shew_3443) yacG 4110757..4110969 (+) 213 WP_041407493.1 DNA gyrase inhibitor YacG -
  SHEW_RS17805 (Shew_3444) mutT 4110970..4111359 (+) 390 WP_011867240.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45843.05 Da        Isoelectric Point: 10.0314

>NTDB_id=27723 SHEW_RS17780 WP_011867235.1 4107121..4108389(+) (pilC) [Shewanella loihica PV-4]
MATASLAKTSTKKQKAAKAQPKVVTFEWKGTNRDGKKTSGELRGTSPAEIKAQLKSQGVNPKVVKKKAEPLFKSDPKIKA
MDIAMITRQIATMLAAGVPIVTTLEMLGRGHEKPRMRELLGTIVADVQSGIPLSDSLKPHRQYFDDLYVDLVGAGEHSGS
LDAVFDRIATYREKAEALKSKIKKAMFYPAAVIVVAIAVTTLLLLFVVPQFEDIFAGFGAELPAFTQMIVSISRWLQSSW
YFFVIGIVVSIWSFKKAHLKSAGFRNKVDELVLKIPIIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNYVY
RSALTKVRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGGLDDMLNKIANIYEMQVDDAVDGLSSLIEPMMMVVIGT
LVGGLIIGMYLPIFQMGNVVGG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=27723 SHEW_RS17780 WP_011867235.1 4107121..4108389(+) (pilC) [Shewanella loihica PV-4]
ATGGCTACCGCATCGCTTGCTAAAACATCAACTAAAAAGCAAAAAGCAGCCAAAGCTCAACCTAAAGTGGTCACTTTTGA
ATGGAAGGGAACTAACCGCGACGGAAAAAAAACCTCAGGCGAATTGAGAGGGACGTCACCTGCCGAAATAAAAGCACAAC
TAAAATCGCAAGGCGTCAACCCAAAAGTTGTCAAAAAGAAAGCTGAACCTCTATTTAAGAGTGATCCAAAAATAAAGGCA
ATGGATATCGCCATGATCACACGCCAGATTGCGACAATGTTGGCGGCAGGTGTCCCCATTGTAACAACCCTTGAGATGCT
AGGGCGCGGTCACGAAAAGCCTAGAATGCGCGAGTTACTTGGAACAATTGTGGCTGATGTGCAGTCCGGTATACCACTAT
CCGACTCTTTAAAACCCCACAGACAATATTTTGATGATCTTTACGTTGATTTGGTTGGTGCTGGAGAACACTCAGGTTCC
CTAGATGCCGTATTTGACAGAATTGCAACGTACAGAGAAAAAGCTGAAGCACTAAAATCAAAAATAAAAAAGGCAATGTT
CTATCCTGCTGCCGTTATCGTTGTTGCTATAGCTGTTACAACACTATTATTGTTATTTGTTGTACCGCAGTTTGAAGACA
TATTTGCTGGTTTTGGAGCTGAGCTCCCGGCATTTACACAAATGATTGTAAGTATCTCGCGATGGCTTCAATCTTCTTGG
TATTTTTTTGTAATAGGCATAGTTGTCTCTATTTGGTCATTTAAAAAGGCTCATTTAAAATCGGCGGGATTCCGAAATAA
AGTAGATGAGCTAGTGCTGAAAATCCCAATTATTGGTGAAATTTTACACAAGGCGGCAATGGCAAGATTTGCGAGAACTT
TAGCAACAACCTTTGCAGCAGGTGTTCCCCTAATTGATGGACTAGAATCTGCCGCCGGAGCATCTGGTAACTATGTCTAC
CGCAGCGCACTTACGAAAGTTCGTACAGAGGTAATGTCTGGGATGCAAATGAACGTCGCTATGCGTACCACAGGACTTTT
CCCGGACATGCTTATCCAAATGGTTATGATAGGTGAAGAATCTGGTGGCCTCGATGATATGCTAAATAAGATAGCGAACA
TATATGAAATGCAAGTAGATGACGCAGTTGACGGATTATCTAGCTTAATTGAACCAATGATGATGGTCGTCATTGGTACA
CTCGTTGGGGGGTTAATTATAGGGATGTACCTCCCTATCTTCCAGATGGGTAATGTCGTCGGCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3QIK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.757

96.445

0.547
  pilC Acinetobacter baumannii D1279779

50.976

97.156

0.495
  pilC Acinetobacter baylyi ADP1

50.123

96.445

0.483
  pilC Legionella pneumophila strain ERS1305867

49.015

96.209

0.472
  pilC Vibrio cholerae strain A1552

46.569

96.682

0.45
  pilC Vibrio campbellii strain DS40M4

45.025

95.261

0.429
  pilG Neisseria meningitidis 44/76-A

41.235

95.972

0.396
  pilG Neisseria gonorrhoeae MS11

41.235

95.972

0.396

Multiple sequence alignment