Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6W69_RS24615 Genome accession   NZ_CP027440
Coordinates   4768505..4769134 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2012C-4502     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4763505..4774134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W69_RS24590 ycbZ 4763895..4765655 (-) 1761 WP_000156476.1 Lon protease family protein -
  C6W69_RS24595 matP 4765841..4766293 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6W69_RS24600 ompA 4766369..4767421 (-) 1053 WP_001346420.1 porin OmpA -
  C6W69_RS24610 sulA 4767777..4768286 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  C6W69_RS24615 sxy/tfoX 4768505..4769134 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6W69_RS24620 yccS 4769097..4771259 (-) 2163 WP_000875040.1 YccS family putative transporter -
  C6W69_RS24625 yccF 4771269..4771715 (-) 447 WP_001261236.1 YccF domain-containing protein -
  C6W69_RS24630 helD 4771838..4773892 (+) 2055 WP_106905427.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=277223 C6W69_RS24615 WP_000839153.1 4768505..4769134(+) (sxy/tfoX) [Escherichia coli strain 2012C-4502]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=277223 C6W69_RS24615 WP_000839153.1 4768505..4769134(+) (sxy/tfoX) [Escherichia coli strain 2012C-4502]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment