Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CFK76_RS05685 Genome accession   NZ_CP032652
Coordinates   1108470..1110173 (-) Length   567 a.a.
NCBI ID   WP_016264857.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LZ217     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1103470..1115173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK76_RS05660 (CFK76_05660) coaBC 1105489..1106706 (-) 1218 WP_016264860.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CFK76_RS05665 (CFK76_05665) rpoZ 1106795..1107052 (-) 258 WP_011374395.1 DNA-directed RNA polymerase subunit omega -
  CFK76_RS05670 (CFK76_05670) gmk 1107057..1107668 (-) 612 WP_011374394.1 guanylate kinase -
  CFK76_RS05675 (CFK76_05675) - 1107741..1107965 (-) 225 WP_016264859.1 YdbC family protein -
  CFK76_RS05680 (CFK76_05680) - 1108088..1108411 (+) 324 WP_016264858.1 hypothetical protein -
  CFK76_RS05685 (CFK76_05685) recN 1108470..1110173 (-) 1704 WP_016264857.1 DNA repair protein RecN Machinery gene
  CFK76_RS05690 (CFK76_05690) argR 1110223..1110675 (-) 453 WP_016264856.1 arginine repressor -
  CFK76_RS05695 (CFK76_05695) - 1110755..1111585 (-) 831 WP_035146584.1 TlyA family RNA methyltransferase -
  CFK76_RS05700 (CFK76_05700) - 1111594..1112466 (-) 873 WP_016264854.1 polyprenyl synthetase family protein -
  CFK76_RS05705 (CFK76_05705) - 1112466..1112696 (-) 231 WP_016264853.1 exodeoxyribonuclease VII small subunit -
  CFK76_RS05710 (CFK76_05710) xseA 1112698..1114047 (-) 1350 WP_016264852.1 exodeoxyribonuclease VII large subunit -
  CFK76_RS05715 (CFK76_05715) folD 1114040..1114891 (-) 852 WP_082267624.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 63236.23 Da        Isoelectric Point: 4.7021

>NTDB_id=277202 CFK76_RS05685 WP_016264857.1 1108470..1110173(-) (recN) [Latilactobacillus sakei strain LZ217]
MLQELVIHDFAIIDQLAISFDEGMTVLSGETGAGKSIIIDAVGLLAGGRGSQDFIRTGAKKATLEGLFTLPENATTAALL
AEYGIEHDDQTILLQRDLALNGHNVCRVNGHLVNTTTLKKIGETLVDIHGQNEHQELMYPDRHLGLLDEFAHTTLASAKA
AYQETYQAYRQTEKALKKKQQNEQEWAQRLDMLKFQTNEIDAAQLQPDEESKLIEERAKLSNFQRINQALQASRAILSGE
EGNALDQIAIAMNQMQEIAELDPEFKRIADNLQTGYYTLQDSGSDISREVDNLEWDEARLDEIEQRLETINNLEHKYGDS
IPEILAYGAQITKELQAMQATEANASELEQQFEQQQAQLLEEAAVLSEKRQAAAQQLEKAVHQQLKALYMAKTVFKVEFA
TVDNQQFMRSGRDKVEFYIQPNPGEKLRPLAKTASGGELSRLMLALKTIFSESQGVTSIIFDEVDTGVSGRVAQAIANKI
SEIAQHSQVLCITHLPQVAAMSDHQYQIQKQIKQNRTETSIQKVTGKKRVAELARMLAGTEVTELTLEHAQELVDLAETA
KAQIRQA

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=277202 CFK76_RS05685 WP_016264857.1 1108470..1110173(-) (recN) [Latilactobacillus sakei strain LZ217]
ATGCTACAAGAATTAGTCATTCACGACTTTGCAATTATAGATCAATTGGCCATTAGTTTCGATGAAGGGATGACGGTTCT
TTCTGGTGAAACAGGGGCCGGGAAATCGATTATTATCGACGCGGTTGGCCTGCTCGCTGGTGGTCGAGGGTCACAGGATT
TTATCCGAACCGGTGCGAAAAAAGCGACGTTAGAGGGCTTGTTTACATTACCCGAAAACGCCACGACTGCCGCGCTTTTA
GCTGAATATGGGATTGAACACGATGATCAAACCATTTTATTACAACGTGATTTGGCATTAAACGGGCATAATGTTTGCCG
CGTTAATGGGCATCTGGTCAATACCACGACGCTTAAAAAGATTGGAGAAACATTAGTTGATATTCACGGTCAAAACGAAC
ATCAAGAATTAATGTATCCTGATCGCCATCTAGGCTTGTTGGATGAGTTTGCCCACACAACCTTGGCGAGTGCTAAGGCG
GCCTATCAAGAAACCTATCAGGCTTACCGGCAAACGGAAAAAGCATTGAAGAAAAAGCAACAAAATGAGCAGGAATGGGC
CCAACGCCTTGATATGCTTAAATTTCAAACTAATGAAATTGACGCAGCGCAATTACAACCAGATGAAGAAAGTAAGTTAA
TCGAAGAACGCGCGAAACTCAGCAACTTCCAACGGATTAATCAGGCCTTGCAAGCTAGTCGCGCCATTTTATCTGGTGAG
GAAGGCAACGCGCTAGATCAAATCGCGATTGCAATGAATCAAATGCAAGAAATTGCGGAATTAGATCCTGAATTCAAAAG
AATTGCTGATAATCTACAAACAGGCTATTACACACTGCAAGATAGCGGTAGTGATATTAGTCGGGAAGTCGATAATCTTG
AATGGGACGAAGCACGCTTGGATGAAATTGAACAGCGCTTAGAAACAATCAATAATCTCGAACATAAATATGGCGATTCA
ATTCCTGAAATTTTGGCTTATGGGGCGCAAATTACCAAAGAATTGCAAGCAATGCAGGCCACCGAAGCCAATGCAAGCGA
ATTAGAGCAACAATTTGAACAACAACAAGCCCAATTGCTGGAAGAAGCAGCCGTTCTTTCTGAGAAACGCCAAGCAGCTG
CTCAACAGTTGGAAAAGGCTGTTCACCAACAACTCAAAGCGCTCTACATGGCTAAAACGGTTTTCAAAGTTGAATTTGCC
ACGGTTGATAATCAGCAATTTATGCGCAGCGGTCGGGACAAAGTTGAATTTTATATTCAACCTAATCCGGGTGAGAAGCT
ACGGCCGCTTGCCAAGACTGCTTCTGGTGGGGAATTATCCCGATTGATGTTGGCGCTTAAAACGATTTTCTCAGAATCAC
AAGGCGTTACCAGCATTATTTTTGATGAAGTTGATACTGGGGTCAGTGGGCGTGTTGCGCAAGCAATTGCCAATAAAATT
AGCGAAATTGCCCAACACTCACAAGTCCTCTGTATTACGCATTTGCCACAAGTAGCGGCGATGAGTGATCATCAATACCA
AATTCAAAAACAAATTAAACAAAACCGCACAGAAACATCAATCCAAAAGGTAACCGGTAAAAAACGCGTTGCTGAACTGG
CTCGTATGTTGGCGGGGACAGAAGTGACGGAATTAACGCTAGAACACGCCCAAGAATTAGTGGACCTCGCAGAAACTGCT
AAAGCACAGATTAGACAAGCTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

45.819

100

0.464