Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6W65_RS06075 Genome accession   NZ_CP027437
Coordinates   1145071..1145700 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2012C-4221     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1140071..1150700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W65_RS06060 helD 1140309..1142363 (-) 2055 WP_106906108.1 DNA helicase IV -
  C6W65_RS06065 yccF 1142486..1142936 (+) 451 Protein_1134 YccF domain-containing protein -
  C6W65_RS06070 yccS 1142946..1145108 (+) 2163 WP_000875041.1 YccS family putative transporter -
  C6W65_RS06075 sxy/tfoX 1145071..1145700 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6W65_RS06080 sulA 1145919..1146428 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6W65_RS06090 ompA 1146784..1147824 (+) 1041 WP_001309394.1 porin OmpA -
  C6W65_RS06095 matP 1147900..1148352 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6W65_RS06100 ycbZ 1148538..1150298 (+) 1761 WP_106906109.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=277182 C6W65_RS06075 WP_000839153.1 1145071..1145700(-) (sxy/tfoX) [Escherichia coli strain 2012C-4221]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=277182 C6W65_RS06075 WP_000839153.1 1145071..1145700(-) (sxy/tfoX) [Escherichia coli strain 2012C-4221]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment