Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   CFK76_RS01505 Genome accession   NZ_CP032652
Coordinates   289900..290706 (+) Length   268 a.a.
NCBI ID   WP_025016070.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LZ217     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 284900..295706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK76_RS01480 (CFK76_01480) - 286328..286570 (-) 243 WP_025016072.1 hypothetical protein -
  CFK76_RS01485 (CFK76_01485) - 286657..287127 (-) 471 WP_076645410.1 nucleoside 2-deoxyribosyltransferase -
  CFK76_RS01490 (CFK76_01490) - 287218..287724 (+) 507 WP_011375171.1 DUF805 domain-containing protein -
  CFK76_RS01495 (CFK76_01495) rlmD 287940..289331 (-) 1392 WP_011375170.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  CFK76_RS01500 (CFK76_01500) - 289719..289898 (+) 180 WP_011375169.1 hypothetical protein -
  CFK76_RS01505 (CFK76_01505) recX 289900..290706 (+) 807 WP_025016070.1 recombination regulator RecX Regulator
  CFK76_RS01510 (CFK76_01510) mutY 290693..291796 (+) 1104 WP_056936431.1 A/G-specific adenine glycosylase -
  CFK76_RS01515 (CFK76_01515) - 291883..292419 (+) 537 WP_011375166.1 nucleoside tri-diphosphate phosphatase -
  CFK76_RS01520 (CFK76_01520) - 292608..294188 (-) 1581 WP_240415541.1 glycosyltransferase family 8 protein -
  CFK76_RS01525 (CFK76_01525) - 294330..294803 (-) 474 WP_025016067.1 hypothetical protein -
  CFK76_RS01530 (CFK76_01530) - 294879..295310 (-) 432 WP_025016066.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31043.96 Da        Isoelectric Point: 6.2613

>NTDB_id=277157 CFK76_RS01505 WP_025016070.1 289900..290706(+) (recX) [Latilactobacillus sakei strain LZ217]
MPQITKITSQKQKGRYNIFIDEQFAFGVTESVLIKFRLAKGLEIDSSLQRDIQKEDDNAKAYQLALNYLSHQLRTEKELT
QHLRDHEITPEGIETSLTKLRELHYLDDQDYADSYVRTVINTSDKGPKVVRQKLIQKGVSANHIDQALTLYTDEEQVTVG
LATAQKLAKKYRHSSFFEQQQKIKQGLMQKGFGGDNLSRIIDELALEEDSDSEADALAALGEKKWRRYRLLEPRERRMKM
QQALYRKGFNIDAINRFIDDQEVSDDTE

Nucleotide


Download         Length: 807 bp        

>NTDB_id=277157 CFK76_RS01505 WP_025016070.1 289900..290706(+) (recX) [Latilactobacillus sakei strain LZ217]
ATGCCACAGATTACTAAAATTACCTCACAAAAACAAAAAGGGCGCTATAACATTTTTATCGACGAGCAGTTTGCCTTTGG
GGTGACTGAAAGTGTCTTAATCAAGTTTCGGCTTGCAAAAGGGCTCGAAATCGATAGTAGCTTACAACGCGACATTCAAA
AAGAAGACGACAATGCCAAGGCCTATCAACTGGCCTTGAATTATTTAAGTCACCAATTACGAACGGAAAAAGAATTAACA
CAACACTTGCGTGATCATGAAATTACGCCAGAAGGCATTGAAACCAGTTTGACAAAATTACGCGAACTACATTATTTGGA
TGATCAGGATTACGCGGACAGTTATGTTAGAACGGTGATTAATACTTCAGATAAGGGGCCTAAAGTGGTTCGACAAAAAT
TGATTCAAAAAGGGGTTAGTGCTAATCATATCGATCAAGCGTTGACGCTATATACAGACGAAGAACAAGTGACAGTCGGC
TTAGCAACTGCCCAAAAGCTAGCGAAGAAGTACCGCCACAGTTCGTTCTTCGAACAACAACAAAAGATTAAACAGGGCTT
GATGCAAAAGGGCTTTGGTGGTGATAATTTAAGTCGGATTATTGACGAATTAGCGCTTGAAGAAGACAGTGATAGTGAAG
CAGATGCATTGGCAGCCCTTGGCGAGAAAAAATGGCGCCGTTATCGCCTATTAGAACCGCGCGAGCGGCGGATGAAGATG
CAACAAGCACTTTACCGGAAAGGATTTAATATTGATGCAATCAACCGTTTCATCGACGACCAAGAAGTATCAGATGACAC
TGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(83-203)

RecX family (RecX_HTH2)

(204-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

38.023

98.134

0.373