Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   CFM83_RS09630 Genome accession   NZ_CP032640
Coordinates   1911433..1912239 (+) Length   268 a.a.
NCBI ID   WP_016264363.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain ZFM229     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1906433..1917239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFM83_RS09610 (CFM83_09610) yycF 1906630..1907343 (+) 714 WP_011373790.1 response regulator YycF -
  CFM83_RS09615 (CFM83_09615) walK 1907353..1909251 (+) 1899 WP_011373791.1 cell wall metabolism sensor histidine kinase WalK -
  CFM83_RS09620 (CFM83_09620) - 1909241..1910572 (+) 1332 WP_035147594.1 YycH family regulatory protein -
  CFM83_RS09625 (CFM83_09625) - 1910577..1911398 (+) 822 WP_035147596.1 two-component system regulatory protein YycI -
  CFM83_RS09630 (CFM83_09630) vicX 1911433..1912239 (+) 807 WP_016264363.1 MBL fold metallo-hydrolase Regulator
  CFM83_RS09635 (CFM83_09635) htrA 1912373..1913632 (+) 1260 WP_025016471.1 S1C family serine protease Regulator
  CFM83_RS09640 (CFM83_09640) rlmH 1914177..1914656 (+) 480 WP_011373797.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  CFM83_RS09645 (CFM83_09645) - 1914796..1915455 (+) 660 WP_025016470.1 hypothetical protein -
  CFM83_RS09650 (CFM83_09650) add 1915512..1916537 (-) 1026 WP_035147601.1 adenosine deaminase -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 29695.31 Da        Isoelectric Point: 5.0059

>NTDB_id=277148 CFM83_RS09630 WP_016264363.1 1911433..1912239(+) (vicX) [Latilactobacillus sakei strain ZFM229]
MVEKDEMRVSVLASSSSGNTTFIETPTQKILVDAGMSGKRVQDLMHSIGRDLKDVDSLLVTHEHRDHSSGVGVLARRYGI
DVYANQPTWDAMASIIGTVPDEHKHVFEMGKTKTLGDIDVESYGVSHDAAAAQFYQFHHNNRAFAILTDTGYVSDQIRGT
IENADAYLVECNHDLEMLRMGKYPWSLKQRILSDTGHLSNEDGASALMAFMGQQTKRVFLGHLSQENNMKELAHLTVASI
LEQHDYGVGTDFEILDTDPAIADPLFVV

Nucleotide


Download         Length: 807 bp        

>NTDB_id=277148 CFM83_RS09630 WP_016264363.1 1911433..1912239(+) (vicX) [Latilactobacillus sakei strain ZFM229]
ATGGTAGAAAAAGATGAAATGCGGGTTAGCGTCTTAGCCAGCAGTAGTTCAGGCAACACAACTTTTATTGAAACACCAAC
TCAAAAAATATTAGTCGACGCGGGAATGAGCGGTAAACGCGTTCAGGATTTAATGCACAGTATCGGTCGGGATTTAAAGG
ATGTTGACAGTCTACTAGTGACGCACGAACATCGCGATCACAGTAGTGGCGTGGGTGTTTTAGCCCGCCGGTATGGGATT
GATGTGTATGCTAACCAACCGACTTGGGATGCGATGGCGTCAATTATTGGGACCGTTCCTGATGAACATAAGCACGTCTT
TGAGATGGGTAAAACCAAAACACTCGGTGATATCGATGTTGAAAGTTATGGCGTTTCACACGATGCCGCTGCGGCGCAAT
TCTATCAATTTCATCATAATAACCGAGCCTTCGCAATCTTAACGGATACGGGTTACGTTTCGGATCAAATCAGAGGCACT
ATCGAAAATGCGGATGCCTACTTGGTGGAATGTAATCACGATTTGGAAATGTTACGAATGGGTAAGTACCCTTGGTCGCT
TAAACAACGTATTCTTAGTGATACGGGTCATCTATCTAACGAAGATGGGGCTTCAGCCTTAATGGCCTTTATGGGACAAC
AAACAAAGCGTGTTTTCCTAGGTCATTTGAGCCAAGAAAACAATATGAAGGAGTTGGCACACTTAACGGTGGCATCAATT
TTAGAACAACATGATTACGGTGTTGGCACGGATTTTGAAATTTTGGATACTGATCCAGCGATTGCGGACCCTTTATTTGT
TGTTTAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(17-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

59.459

96.642

0.575