Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   C6V80_RS04940 Genome accession   NZ_CP027432
Coordinates   908827..910647 (-) Length   606 a.a.
NCBI ID   WP_123352154.1    Uniprot ID   -
Organism   Caminibacter pacificus strain TB6     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 903827..915647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6V80_RS04915 (C6V80_04885) ppa 903960..904478 (-) 519 WP_123351869.1 inorganic diphosphatase -
  C6V80_RS04920 (C6V80_04890) - 904465..905265 (-) 801 WP_235823154.1 YihY family inner membrane protein -
  C6V80_RS04925 (C6V80_04895) abc-f 905416..907356 (-) 1941 WP_123351867.1 ribosomal protection-like ABC-F family protein -
  C6V80_RS04930 (C6V80_04900) - 907567..908358 (-) 792 WP_123351866.1 bifunctional riboflavin kinase/FAD synthetase -
  C6V80_RS04935 (C6V80_04905) - 908351..908803 (-) 453 WP_211325212.1 putative metalloprotease CJM1_0395 family protein -
  C6V80_RS04940 (C6V80_04910) uvrC 908827..910647 (-) 1821 WP_123352154.1 excinuclease ABC subunit UvrC Machinery gene
  C6V80_RS04945 (C6V80_04915) - 910693..912336 (-) 1644 WP_123351865.1 sodium:solute symporter family protein -
  C6V80_RS10150 - 912333..912506 (-) 174 WP_170151103.1 symporter small accessory protein -
  C6V80_RS04950 (C6V80_04920) - 912621..914426 (+) 1806 WP_123351864.1 thiamine pyrophosphate-dependent enzyme -
  C6V80_RS04955 (C6V80_04925) - 914423..914950 (+) 528 WP_123351863.1 2-oxoacid:acceptor oxidoreductase family protein -
  C6V80_RS04960 (C6V80_04930) - 914934..915335 (+) 402 WP_123351862.1 PaaI family thioesterase -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 70286.64 Da        Isoelectric Point: 9.7627

>NTDB_id=277144 C6V80_RS04940 WP_123352154.1 908827..910647(-) (uvrC) [Caminibacter pacificus strain TB6]
MLEKVRSLPDKPGIYQYFDENGKLLYIGKAKSLKKRVKSYFRFNPFRPADNLSPRIYKMISEAKDLNYIVVENENDALIL
ENSLIKQLKPKYNILLRDDKTYPYIYIDLDEEFPRLEITRKVVKGKNIKYFGPFSSGASAILKTVYEEIPLVQSKSCLRG
KKACLYHQIGKCLAPCEGKITSKEYMKYVDKAIKLVHDKEKILEILYKKMEKYAENLQFEEAAEIRDRIKSIESAEIYSH
VDLAKLEDLDIFVVEVFGNKAVVIRIFVREGKVVASSHNIINSQTIPEKSEIYTRAILEFYSTQTPFTSSKILVGDDFEE
REWLSKVLSEKFNKKITIITPTTNERKSLVKLAKLNAAEVVKNQKENTILLEIKTLFNLQNVPYKIEVFDTSHMQGEATV
GAMVVWEDGKFKKSDYRHYHLEGKDEYSQMRELLTRRAQSFEKNPPPELWLIDGGAAQLKIAKEVIDSTGANVDILAISK
EKIDAKAHRAKGAAKDKIYFPWKMEEGELKIEKIDLSEKDKRLQFLQMLRDEAHRFAIEFHRKTKRKKDTQIDLLKIKGI
GKAKMTKLLNYFGTFENIKKASFNELKSVLNEKDAKAIIEFFQERK

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=277144 C6V80_RS04940 WP_123352154.1 908827..910647(-) (uvrC) [Caminibacter pacificus strain TB6]
CTGCTTGAAAAAGTGCGCTCACTGCCCGATAAACCAGGAATTTATCAATATTTCGACGAAAACGGCAAACTTCTATACAT
CGGAAAAGCGAAAAGTCTAAAAAAAAGGGTAAAAAGTTATTTTAGATTCAATCCTTTCAGACCCGCCGATAATCTGAGCC
CGAGAATTTATAAAATGATTAGCGAAGCAAAAGATTTAAACTATATAGTCGTAGAAAACGAAAACGACGCGCTTATTCTT
GAAAATTCACTCATAAAACAGCTAAAACCCAAATACAACATATTACTTCGCGACGACAAAACGTATCCTTATATTTATAT
AGATTTGGACGAAGAGTTTCCAAGACTCGAAATCACGAGAAAAGTCGTAAAAGGCAAAAACATCAAATATTTCGGACCTT
TTAGCAGCGGAGCGAGCGCAATACTTAAAACCGTATATGAAGAAATACCTCTGGTGCAGTCAAAAAGCTGCCTTAGAGGA
AAAAAGGCGTGTTTGTATCATCAAATAGGCAAATGTTTAGCACCGTGTGAGGGGAAAATAACAAGCAAAGAGTATATGAA
GTATGTGGATAAAGCGATAAAATTGGTGCACGATAAAGAAAAGATATTGGAAATACTTTATAAAAAAATGGAAAAATACG
CCGAAAATCTTCAATTCGAAGAAGCGGCGGAAATCAGAGACAGAATAAAATCAATCGAAAGTGCCGAAATATACTCTCAT
GTAGATTTGGCAAAACTTGAAGATTTGGATATTTTTGTCGTTGAGGTATTCGGAAATAAAGCCGTTGTAATTAGAATTTT
CGTTCGCGAAGGAAAAGTGGTCGCAAGTTCTCATAATATAATCAACTCCCAAACTATCCCTGAAAAAAGCGAAATTTACA
CACGGGCGATTTTGGAGTTTTATTCGACTCAAACTCCTTTTACGTCAAGCAAAATATTGGTGGGGGACGATTTTGAAGAA
AGAGAATGGCTAAGTAAAGTTCTCAGCGAAAAATTTAATAAAAAAATCACCATTATCACCCCGACTACAAACGAAAGAAA
AAGCCTTGTCAAACTTGCAAAACTAAACGCCGCGGAAGTTGTGAAAAATCAAAAAGAAAACACTATTTTACTTGAAATCA
AAACACTCTTTAATCTCCAAAACGTTCCTTATAAAATCGAAGTTTTCGATACTTCTCATATGCAAGGAGAAGCGACTGTG
GGAGCTATGGTGGTATGGGAAGACGGAAAATTTAAAAAGAGCGATTACAGGCATTATCATCTGGAAGGAAAAGACGAATA
TTCTCAAATGAGAGAGCTTTTAACAAGACGCGCTCAAAGTTTTGAAAAAAACCCGCCGCCCGAGCTTTGGCTGATTGACG
GAGGGGCGGCTCAATTGAAAATTGCAAAAGAAGTTATTGACTCAACCGGTGCGAATGTCGATATATTAGCGATATCTAAA
GAAAAAATCGACGCAAAAGCCCATAGAGCAAAAGGTGCGGCAAAAGATAAAATCTATTTTCCTTGGAAAATGGAAGAAGG
AGAGTTAAAAATTGAAAAAATAGACCTAAGCGAAAAAGATAAAAGGCTTCAGTTTTTACAAATGCTTAGAGATGAAGCTC
ACAGATTCGCAATAGAGTTTCACAGAAAAACAAAAAGAAAAAAAGATACTCAAATAGACCTTTTAAAAATCAAAGGTATA
GGAAAAGCCAAAATGACGAAGCTTTTAAACTATTTCGGTACGTTTGAAAATATTAAAAAAGCCTCTTTTAACGAACTAAA
AAGCGTCCTAAACGAAAAAGACGCAAAAGCGATAATTGAATTTTTTCAAGAAAGAAAGTAA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(12-93)

UvrB/uvrC motif (UVR)

(202-234)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(375-538)

Helix-hairpin-helix domain (HHH_5)

(553-603)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

49.249

98.845

0.487

Multiple sequence alignment