Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   C6V80_RS02890 Genome accession   NZ_CP027432
Coordinates   524391..524774 (-) Length   127 a.a.
NCBI ID   WP_123352260.1    Uniprot ID   A0AAJ4UXR0
Organism   Caminibacter pacificus strain TB6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 519391..529774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6V80_RS02870 (C6V80_02865) fliP 519825..520553 (+) 729 WP_123352264.1 flagellar type III secretion system pore protein FliP -
  C6V80_RS02875 (C6V80_02870) trmA 520667..521767 (+) 1101 WP_123352263.1 tRNA (uridine(54)-C5)-methyltransferase TrmA -
  C6V80_RS02880 (C6V80_02875) - 522190..523026 (+) 837 WP_123352262.1 ketopantoate reductase family protein -
  C6V80_RS02885 (C6V80_02880) - 523175..524401 (+) 1227 WP_170151113.1 diguanylate cyclase -
  C6V80_RS02890 (C6V80_02885) dprB 524391..524774 (-) 384 WP_123352260.1 Holliday junction resolvase RuvX Machinery gene
  C6V80_RS02895 (C6V80_02890) - 524747..525235 (-) 489 WP_123352259.1 DNA-deoxyinosine glycosylase -
  C6V80_RS02900 (C6V80_02895) - 525421..526125 (-) 705 WP_123352258.1 DNA-processing protein DprA -
  C6V80_RS02905 (C6V80_02900) - 526112..527155 (-) 1044 WP_123352257.1 divergent polysaccharide deacetylase family protein -
  C6V80_RS02910 (C6V80_02905) minE 527152..527385 (-) 234 WP_123352256.1 cell division topological specificity factor MinE -
  C6V80_RS02915 (C6V80_02910) minD 527382..528191 (-) 810 WP_123352255.1 septum site-determining protein MinD -
  C6V80_RS02920 (C6V80_02915) ilvC 528263..529282 (-) 1020 WP_123352254.1 ketol-acid reductoisomerase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14308.64 Da        Isoelectric Point: 9.7299

>NTDB_id=277142 C6V80_RS02890 WP_123352260.1 524391..524774(-) (dprB) [Caminibacter pacificus strain TB6]
MEKIIAIDVGLKRIGAAYTPNGSVVVPLPAIIRKNRNQAARDVSNLLKEYQADILVVGIPFTNEEMQRRIKHFVTLIDFD
GKIEFQDESFTSAIVEEEIKGQIKHKKDGRIDSLAAKKILESYLAKK

Nucleotide


Download         Length: 384 bp        

>NTDB_id=277142 C6V80_RS02890 WP_123352260.1 524391..524774(-) (dprB) [Caminibacter pacificus strain TB6]
ATGGAAAAAATTATTGCTATCGACGTAGGATTAAAAAGAATAGGAGCGGCTTATACTCCAAACGGCTCGGTTGTAGTCCC
CTTACCTGCTATTATCAGAAAAAACAGAAACCAAGCCGCAAGAGATGTGAGTAATTTGTTAAAAGAATATCAAGCAGATA
TTTTGGTAGTAGGTATTCCTTTTACAAATGAAGAGATGCAAAGAAGAATAAAACATTTCGTAACTTTAATTGATTTTGAC
GGAAAAATAGAATTTCAAGACGAAAGTTTCACAAGCGCTATCGTAGAAGAAGAGATAAAAGGCCAAATAAAACACAAAAA
AGACGGAAGAATCGACTCTCTTGCCGCTAAAAAAATTCTTGAGAGTTATTTAGCTAAAAAATAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(3-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

48.062

100

0.488

Multiple sequence alignment