Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C6V80_RS01845 Genome accession   NZ_CP027432
Coordinates   331573..332874 (-) Length   433 a.a.
NCBI ID   WP_123352670.1    Uniprot ID   A0AAJ4RCT1
Organism   Caminibacter pacificus strain TB6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 326573..337874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6V80_RS01805 (C6V80_01800) - 326844..327647 (+) 804 WP_123352467.1 HAD hydrolase family protein -
  C6V80_RS01810 (C6V80_01805) rimP 327644..328090 (+) 447 WP_123352466.1 ribosome maturation factor RimP -
  C6V80_RS01815 (C6V80_01810) ribD 328083..329060 (+) 978 WP_180937083.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  C6V80_RS01820 (C6V80_01815) - 329053..329385 (+) 333 Protein_351 helix-turn-helix domain-containing protein -
  C6V80_RS01825 (C6V80_01820) - 329370..329606 (+) 237 WP_123352463.1 winged helix-turn-helix transcriptional regulator -
  C6V80_RS01830 (C6V80_01825) - 329616..330347 (+) 732 WP_123352462.1 class I SAM-dependent methyltransferase -
  C6V80_RS01835 (C6V80_01830) - 330331..331146 (+) 816 WP_123352461.1 DnaJ domain-containing protein -
  C6V80_RS01840 (C6V80_01835) - 331133..331483 (-) 351 WP_123352460.1 hypothetical protein -
  C6V80_RS01845 (C6V80_01840) radA 331573..332874 (-) 1302 WP_123352670.1 DNA repair protein RadA Machinery gene
  C6V80_RS01850 (C6V80_01845) ftsY 332867..333739 (-) 873 WP_123352459.1 signal recognition particle-docking protein FtsY -
  C6V80_RS01855 (C6V80_01850) - 333739..334176 (-) 438 WP_123352458.1 hypothetical protein -
  C6V80_RS01860 (C6V80_01855) - 334216..334821 (+) 606 WP_123352457.1 5-formyltetrahydrofolate cyclo-ligase -
  C6V80_RS01865 (C6V80_01860) rny 334745..336304 (+) 1560 WP_123352456.1 ribonuclease Y -
  C6V80_RS01870 (C6V80_01865) - 336347..336928 (+) 582 WP_123352455.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 47570.40 Da        Isoelectric Point: 8.4109

>NTDB_id=277139 C6V80_RS01845 WP_123352670.1 331573..332874(-) (radA) [Caminibacter pacificus strain TB6]
MAKQKTVFECIECGYKSAKWMGKCPACGAWDSFVEVSESKTSKTAKTPSKILKFEEIEKDEIERFSSGDSELDLVLGGGI
VPGSLVLIGGSPGVGKSTLMLKLAGNIDKKTLYVAGEESPGQIKIRAERLGIKNKDLYLMPEIVVENIIEEIKKGYELVI
IDSIQTIYSQNLQSAPGSVSQVREATFELMRAAKETKTPIFIIGHITKEGSIAGPRVLEHMVDTVLYFEGDASKELRILR
SFKNRFGSTSEIGIFEMTKEGLKSAKNKSFFSKKALPGSAITVILEGTRPIVLEVQALVSESYSIPKRSATGFDLARLNM
ILALLEKKLNLPFNQYDVFINVTGGIKINEPAADLAIIAAIVSSFRNRPISKETVFLGEVSLVGDIREVPGLDLRLKEAA
SLGFKKAITPTKPLENHLKTYVVTEVEKLLEWM

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=277139 C6V80_RS01845 WP_123352670.1 331573..332874(-) (radA) [Caminibacter pacificus strain TB6]
GTGGCTAAGCAAAAAACCGTTTTCGAATGTATCGAGTGCGGATACAAAAGCGCCAAATGGATGGGAAAATGCCCCGCCTG
CGGCGCTTGGGACAGCTTTGTCGAAGTTAGCGAATCAAAAACTTCAAAAACCGCAAAAACACCTTCTAAAATCTTAAAAT
TCGAAGAAATAGAAAAAGACGAAATCGAAAGATTCAGCTCCGGAGATAGCGAGCTTGATTTGGTCTTAGGCGGAGGAATA
GTACCCGGAAGTTTGGTATTAATAGGCGGAAGCCCCGGTGTTGGAAAATCGACTCTTATGCTAAAACTCGCAGGAAACAT
TGACAAAAAAACCCTTTATGTAGCGGGAGAAGAGTCCCCAGGACAAATAAAAATAAGAGCCGAAAGACTTGGAATAAAAA
ATAAAGACCTCTATTTGATGCCTGAAATTGTAGTTGAAAATATAATAGAAGAGATAAAAAAAGGTTACGAACTTGTCATA
ATAGATTCAATCCAAACAATCTACTCCCAAAATCTCCAATCGGCTCCCGGAAGCGTATCGCAAGTGAGAGAAGCTACTTT
CGAGCTTATGAGAGCGGCAAAAGAAACGAAAACGCCTATTTTTATCATCGGTCATATCACAAAAGAAGGCTCGATAGCAG
GTCCGAGAGTACTTGAGCATATGGTCGATACGGTCTTATATTTCGAAGGAGACGCAAGTAAAGAGCTTAGAATACTTAGA
AGTTTCAAAAACAGATTCGGCTCAACAAGCGAAATAGGAATTTTCGAAATGACTAAAGAAGGTCTTAAAAGCGCCAAAAA
TAAAAGCTTCTTTAGCAAAAAAGCGCTTCCTGGAAGTGCGATTACGGTCATTTTAGAAGGAACAAGACCTATCGTCCTTG
AAGTCCAAGCACTTGTGAGTGAGAGTTATTCTATTCCAAAAAGAAGCGCAACGGGATTTGATTTGGCAAGACTTAATATG
ATTTTAGCTTTGCTCGAAAAAAAACTAAATCTTCCTTTTAATCAATACGATGTATTTATAAACGTAACGGGAGGTATCAA
AATAAACGAACCGGCCGCGGATTTGGCTATTATCGCAGCGATAGTGAGCTCTTTTAGAAACAGACCAATAAGCAAAGAGA
CCGTATTTTTAGGAGAAGTCAGCCTTGTAGGAGACATAAGAGAAGTCCCGGGGCTTGATTTGAGATTAAAAGAAGCGGCG
AGCTTGGGCTTTAAAAAAGCCATAACTCCGACAAAACCACTTGAAAACCACCTAAAAACCTACGTAGTCACAGAAGTAGA
AAAACTTCTTGAATGGATGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-210)

Subunit ChlI of Mg-chelatase (ChlI)

(329-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.66

100

0.506
  radA Streptococcus mitis SK321

46.563

100

0.485
  radA Streptococcus pneumoniae Rx1

48.009

98.614

0.473
  radA Streptococcus pneumoniae D39

48.009

98.614

0.473
  radA Streptococcus pneumoniae R6

48.009

98.614

0.473
  radA Streptococcus pneumoniae TIGR4

48.009

98.614

0.473
  radA Streptococcus mitis NCTC 12261

48.009

98.614

0.473

Multiple sequence alignment