Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CFM83_RS05260 Genome accession   NZ_CP032640
Coordinates   1043028..1044767 (-) Length   579 a.a.
NCBI ID   WP_094365742.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain ZFM229     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1038028..1049767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFM83_RS05240 (CFM83_05240) pdhA 1038050..1039159 (-) 1110 WP_016265227.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  CFM83_RS05245 (CFM83_05245) - 1039483..1040166 (-) 684 WP_025015724.1 hypothetical protein -
  CFM83_RS05250 (CFM83_05250) def 1040672..1041229 (+) 558 WP_011374787.1 peptide deformylase -
  CFM83_RS05255 (CFM83_05255) rcrQ 1041278..1043041 (-) 1764 WP_016265229.1 ABC transporter ATP-binding protein Regulator
  CFM83_RS05260 (CFM83_05260) rcrP 1043028..1044767 (-) 1740 WP_094365742.1 ABC transporter ATP-binding protein Regulator
  CFM83_RS05265 (CFM83_05265) - 1044795..1045280 (-) 486 WP_016265231.1 hypothetical protein -
  CFM83_RS05270 (CFM83_05270) - 1045477..1045689 (+) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  CFM83_RS05275 (CFM83_05275) rnjA 1045694..1047382 (+) 1689 WP_016265232.1 ribonuclease J1 -
  CFM83_RS05280 (CFM83_05280) - 1047515..1048480 (+) 966 WP_016265233.1 diacylglycerol/lipid kinase family protein -
  CFM83_RS05285 (CFM83_05285) thiW 1048530..1049036 (-) 507 WP_025015722.1 energy coupling factor transporter S component ThiW -
  CFM83_RS05290 (CFM83_05290) tenA 1049026..1049712 (-) 687 WP_016265235.1 thiaminase II -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 64683.15 Da        Isoelectric Point: 9.1434

>NTDB_id=277116 CFM83_RS05260 WP_094365742.1 1043028..1044767(-) (rcrP) [Latilactobacillus sakei strain ZFM229]
MKLMWRYTIRYKKLLFWNFICVFGFILIELGLPTLLGQIIDKGINRHTVGPVWQYGTLMVVISLIGLVGLIGLAYTGSRL
TTNLTRDIRNDIFKKTMQFSHHEYGEFGVSSLITRTTNDAFQVTQFMVQVLRTGFMTPMMIVASAFMIVRTSLSLSWIVF
SAIPILLVGVVIIGWLSEPMSAEQQKNLDAINLNLRENLTGIRVIRAFVREKFQSMRFRKVNEAYSQSSIKLFTLVALAQ
PGFSFIFNIVFVLIIWQGAVQINTGHLAVGTLIAFIEYIFHVLFSFMLFASVFMMYPRAAVSAERIEKVLNSPVDITDDD
QGIQTTTTQGELAFENVSFAYPGPTESPVIRDVSFKAHPGETVAFIGSTGSGKSTLIQLIPRFFDVTRGQVMIDGYDVRD
YQLKALRQKIGFIPQKAVLFTGTIADNLRYGNPEATDAELWDALTIAQSKTFVAEKPDGLQTYLAEGGNNLSGGQKQRLA
IARAIVRRPDIYVFDDSFSALDYQTDAALRGALKSITKEATVLIVAQRVGTIMNADRIVVLNEGQVVGIGTHKELLKTNE
VYRAIAASQLSKEELNEEY

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=277116 CFM83_RS05260 WP_094365742.1 1043028..1044767(-) (rcrP) [Latilactobacillus sakei strain ZFM229]
ATGAAATTAATGTGGCGCTATACCATTCGCTATAAAAAACTGTTATTTTGGAATTTTATCTGCGTATTTGGGTTTATTTT
AATTGAACTGGGATTACCAACATTATTAGGACAAATTATCGATAAAGGTATCAACCGCCATACGGTCGGGCCGGTTTGGC
AATATGGGACTTTAATGGTCGTCATTTCCCTGATTGGCCTAGTGGGTTTGATCGGCTTAGCCTACACGGGGAGTCGCTTA
ACCACTAATTTAACGCGTGATATCCGGAACGATATCTTTAAAAAAACGATGCAATTTTCACATCATGAATATGGTGAGTT
TGGCGTGTCTTCCTTAATTACTCGGACGACCAACGATGCGTTTCAAGTGACGCAATTCATGGTGCAAGTGTTACGAACGG
GTTTTATGACCCCGATGATGATCGTTGCCAGTGCGTTCATGATTGTGCGGACGAGTCTGTCATTATCATGGATTGTTTTT
TCAGCCATTCCGATTTTATTAGTTGGGGTGGTTATCATTGGTTGGTTATCCGAACCAATGTCTGCAGAACAACAAAAAAA
CTTAGATGCAATCAATTTAAACTTACGTGAAAATTTAACTGGGATTCGGGTTATTCGCGCATTTGTGCGTGAAAAATTCC
AGAGTATGCGTTTTAGAAAAGTTAATGAAGCCTACAGTCAGAGTTCAATCAAACTCTTTACATTAGTAGCCCTCGCACAA
CCTGGCTTTTCATTTATCTTCAATATTGTGTTCGTGTTAATCATTTGGCAAGGGGCGGTTCAAATTAATACCGGTCACTT
AGCAGTGGGGACGTTAATCGCCTTTATTGAATACATTTTCCATGTACTATTTTCATTCATGCTCTTTGCGAGTGTCTTCA
TGATGTACCCTAGAGCGGCTGTTTCAGCTGAACGGATTGAAAAAGTCCTTAATTCACCCGTAGATATTACGGATGATGAT
CAGGGGATTCAAACTACGACTACCCAAGGCGAATTGGCTTTTGAAAATGTGTCGTTTGCTTATCCTGGTCCGACAGAAAG
TCCGGTCATTCGGGATGTCAGTTTTAAAGCCCATCCTGGTGAAACTGTCGCCTTCATCGGTAGTACAGGGAGTGGTAAAT
CAACCTTAATTCAGTTGATTCCACGCTTTTTCGATGTGACGCGGGGGCAAGTGATGATTGATGGTTACGATGTTCGTGAT
TACCAATTGAAAGCATTACGCCAAAAAATTGGTTTTATTCCCCAAAAGGCGGTCCTCTTTACCGGCACGATTGCGGATAA
CTTGCGCTATGGTAATCCGGAAGCGACGGATGCTGAGTTATGGGATGCTTTAACGATTGCTCAATCCAAAACATTCGTGG
CGGAAAAACCAGACGGTCTCCAAACTTATTTGGCTGAAGGTGGTAACAACTTATCAGGTGGTCAAAAGCAACGACTAGCG
ATTGCCAGAGCAATTGTTCGTCGCCCAGACATCTACGTCTTTGACGATAGCTTTTCAGCCTTGGATTACCAAACAGACGC
AGCATTACGAGGCGCTTTAAAATCGATTACGAAAGAGGCAACCGTCTTAATTGTCGCCCAACGTGTGGGGACGATTATGA
ATGCAGATCGGATTGTCGTCTTAAATGAAGGACAAGTTGTGGGCATCGGTACCCACAAAGAATTACTTAAAACAAATGAG
GTTTACCGGGCCATTGCCGCCTCACAGTTGTCAAAGGAGGAGCTCAATGAAGAATATTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-283)

ABC transporter (ABC_tran)

(351-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.816

100

0.415