Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CFM83_RS05255 Genome accession   NZ_CP032640
Coordinates   1041278..1043041 (-) Length   587 a.a.
NCBI ID   WP_016265229.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain ZFM229     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1036278..1048041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFM83_RS05235 (CFM83_05235) - 1037071..1038048 (-) 978 WP_016265226.1 alpha-ketoacid dehydrogenase subunit beta -
  CFM83_RS05240 (CFM83_05240) pdhA 1038050..1039159 (-) 1110 WP_016265227.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  CFM83_RS05245 (CFM83_05245) - 1039483..1040166 (-) 684 WP_025015724.1 hypothetical protein -
  CFM83_RS05250 (CFM83_05250) def 1040672..1041229 (+) 558 WP_011374787.1 peptide deformylase -
  CFM83_RS05255 (CFM83_05255) rcrQ 1041278..1043041 (-) 1764 WP_016265229.1 ABC transporter ATP-binding protein Regulator
  CFM83_RS05260 (CFM83_05260) rcrP 1043028..1044767 (-) 1740 WP_094365742.1 ABC transporter ATP-binding protein Regulator
  CFM83_RS05265 (CFM83_05265) - 1044795..1045280 (-) 486 WP_016265231.1 hypothetical protein -
  CFM83_RS05270 (CFM83_05270) - 1045477..1045689 (+) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  CFM83_RS05275 (CFM83_05275) rnjA 1045694..1047382 (+) 1689 WP_016265232.1 ribonuclease J1 -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 65070.62 Da        Isoelectric Point: 6.2489

>NTDB_id=277115 CFM83_RS05255 WP_016265229.1 1041278..1043041(-) (rcrQ) [Latilactobacillus sakei strain ZFM229]
MKNIKVLKRLMRYIGPYKITFWSAITATVISVLANALWPFIMGLAVTEISQNLAQHVAVNFSYITKVIAMILSFALLYQT
MMFLGSFLMTRAVQHAMRDLRRDINLQMNALPVRFFDSQQQGNILSRVTNDVDAITNALQQSLIQVVTSILGIIMAVIMM
LTINLWMALLSLIMIPASLLISKAIIKKSQVYFQGQQNTLGEMNGYVQENYGGFSVLKLYGQEDRAVDEFAAITDRLTEF
GFKAAFISGIMMPLVGLTTNLTYAGMATLGGYYVLHGVITVGNLQAFIQYIWQINQPISQITQLSGVMQAAAAATQRVFE
ILDEPIEPTDQETAELPADVQGKVEFKDVSFSYDPAKPLIRDLSFTANPGDKIAIVGPTGAGKTTMINLLMRFYDVSSGQ
ILIDGVDTRQLSKQTVRSLFGMVLQDAWLYHTTITENIRFGKLDATEYEVVDAAKTANVDHFIHTLPNGYQMAIDEEADN
VSLGQKQLLTIARAVIANPKILILDEATSSVDTRLESLLQKAMEKVMQGRTSFVIAHRLSTIRDANLILVMDHGQIVEKG
THDDLLAANGVYAKLYNSQFAETKLNA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=277115 CFM83_RS05255 WP_016265229.1 1041278..1043041(-) (rcrQ) [Latilactobacillus sakei strain ZFM229]
ATGAAGAATATTAAGGTGCTCAAACGCCTGATGCGCTATATTGGGCCTTATAAAATAACGTTCTGGTCAGCAATTACCGC
AACGGTGATTTCCGTTTTAGCGAATGCGTTGTGGCCATTTATCATGGGACTAGCAGTGACTGAAATTAGTCAAAACTTAG
CGCAACACGTCGCCGTTAACTTTAGTTACATTACTAAAGTCATCGCGATGATTCTCAGCTTTGCGTTACTTTATCAAACA
ATGATGTTTTTGGGATCGTTTTTAATGACGCGTGCAGTGCAACACGCAATGCGTGATTTACGGCGGGATATCAATCTACA
GATGAACGCTTTGCCAGTCCGTTTCTTTGATTCACAACAACAAGGTAATATCTTGTCGCGAGTTACCAATGATGTCGATG
CAATCACGAATGCCTTGCAACAGAGTTTAATTCAAGTTGTGACCTCAATTTTGGGAATCATTATGGCGGTTATCATGATG
TTGACGATTAATTTATGGATGGCTTTACTATCTTTAATTATGATTCCGGCCTCACTTTTGATTTCCAAAGCAATCATCAA
AAAGTCACAGGTTTACTTCCAGGGGCAACAAAATACCTTGGGTGAAATGAATGGTTATGTTCAGGAAAACTACGGTGGCT
TCAGTGTCTTGAAGTTGTATGGTCAAGAAGACAGAGCGGTTGATGAATTTGCAGCGATTACCGATCGATTGACTGAATTT
GGCTTCAAAGCGGCCTTTATTTCAGGAATCATGATGCCGTTAGTGGGTCTAACCACTAATCTAACCTATGCTGGGATGGC
AACCTTGGGTGGTTACTATGTCTTGCACGGGGTCATTACGGTTGGTAATTTACAGGCCTTTATTCAATATATTTGGCAGA
TTAATCAACCAATTTCGCAAATTACGCAGTTATCTGGTGTCATGCAAGCGGCTGCCGCTGCGACACAACGGGTTTTTGAA
ATCTTGGATGAACCTATTGAACCCACTGATCAAGAAACAGCTGAATTACCGGCTGACGTTCAGGGAAAAGTTGAATTTAA
AGATGTCAGCTTTAGCTATGATCCAGCCAAACCATTGATTCGGGATCTAAGTTTCACCGCCAATCCGGGTGATAAAATTG
CGATTGTTGGGCCAACCGGTGCTGGGAAGACGACCATGATTAATTTATTGATGCGTTTTTACGATGTTAGTTCTGGTCAA
ATCCTAATTGATGGCGTCGATACACGCCAGTTGAGTAAACAAACAGTTCGCTCACTCTTTGGGATGGTTCTTCAGGATGC
TTGGTTGTATCACACAACGATTACGGAAAATATTCGCTTTGGGAAGCTAGATGCTACCGAATATGAAGTCGTGGATGCTG
CCAAAACGGCCAATGTTGATCACTTCATCCATACGTTGCCAAATGGTTATCAGATGGCAATTGATGAAGAAGCGGATAAC
GTGTCGTTAGGGCAAAAGCAACTCCTAACAATTGCCCGGGCGGTCATTGCTAACCCTAAAATTTTGATTTTAGATGAAGC
AACCAGTTCGGTCGATACGCGCTTAGAAAGCTTATTGCAAAAGGCGATGGAAAAAGTGATGCAGGGTCGAACCAGTTTTG
TGATTGCCCATCGCTTATCAACAATTCGGGATGCTAACTTAATTTTAGTAATGGATCACGGTCAAATTGTTGAAAAGGGA
ACACATGACGACTTATTAGCTGCTAATGGTGTTTACGCTAAGCTTTATAACAGTCAATTTGCAGAAACAAAATTAAATGC
ATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(361-509)

ABC transporter transmembrane region (ABC_membrane)

(24-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.906

99.659

0.428