Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C6N67_RS10060 Genome accession   NZ_CP027427
Coordinates   2082065..2083438 (+) Length   457 a.a.
NCBI ID   WP_010372293.1    Uniprot ID   A0A0D1KBD6
Organism   Weissella cibaria strain BM2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2077065..2088438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N67_RS10030 (C6N67_10025) budA 2077376..2078095 (+) 720 WP_099088474.1 acetolactate decarboxylase -
  C6N67_RS10035 (C6N67_10030) - 2078181..2079188 (+) 1008 WP_010372276.1 zinc-binding alcohol dehydrogenase family protein -
  C6N67_RS10040 (C6N67_10035) - 2079597..2080487 (+) 891 WP_106444699.1 LysM peptidoglycan-binding domain-containing protein -
  C6N67_RS10045 (C6N67_10040) - 2080548..2081090 (+) 543 WP_085639319.1 NlpC/P60 family protein -
  C6N67_RS10050 (C6N67_10045) - 2081134..2081412 (+) 279 WP_010372287.1 GNAT family N-acetyltransferase -
  C6N67_RS10055 (C6N67_10050) - 2081508..2082050 (+) 543 WP_106444700.1 dUTP diphosphatase -
  C6N67_RS10060 (C6N67_10055) radA 2082065..2083438 (+) 1374 WP_010372293.1 DNA repair protein RadA Machinery gene
  C6N67_RS10065 (C6N67_10060) - 2083454..2084557 (+) 1104 WP_029237460.1 PIN/TRAM domain-containing protein -
  C6N67_RS10070 (C6N67_10065) gltX 2084637..2086133 (+) 1497 WP_106444701.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49224.36 Da        Isoelectric Point: 5.3902

>NTDB_id=277099 C6N67_RS10060 WP_010372293.1 2082065..2083438(+) (radA) [Weissella cibaria strain BM2]
MAKTKTQFVCSNCGYVSQRYMGRCSNCGAWGTFVEEVIQPEKADRKSRVNLAGQIAKVERLGQVSIEETPRVDTQIDEFN
RVLGGGIVPGSMVLIGGDPGIGKSTLLLQVSSQLANSGGTILYVAGEESASQIKLRAERLGVRGDADFFLYPETDMSQIR
KAIDETKPDYVIIDSIQTMQQPDVSSAVGSVAQIRETTAELLQIAKTNGITIFIVGHVTKDGAIAGPKILEHMVDTVLYF
EGDNQRSFRLLRAVKNRFGSTNELGVFEMNEGGLAEVTNPSGLFLEDRLSDASGSAVVVAMEGSRPILVEVQALVTPTVF
GNAQRTAAGIDRNRISLLMAVLEKRANLLLQNQDAYVRAAGGVKLDEPAIDLAVAVAIASSYRDKGTRATDAFVGEIGLT
GEIRRVPNVVDRILEAKKLGFKRVFVPQHSVDTMKDIPGIQIIGVATLADALRLALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=277099 C6N67_RS10060 WP_010372293.1 2082065..2083438(+) (radA) [Weissella cibaria strain BM2]
ATGGCAAAAACAAAAACCCAGTTTGTATGTTCTAACTGTGGGTATGTTTCACAACGTTACATGGGACGTTGCTCTAACTG
TGGTGCCTGGGGAACGTTCGTTGAAGAAGTTATTCAACCAGAAAAGGCGGACCGAAAGTCACGCGTTAACCTGGCTGGAC
AAATTGCGAAGGTTGAGCGATTAGGCCAAGTTAGCATCGAGGAGACGCCACGTGTCGATACGCAAATTGATGAATTTAAC
CGGGTACTTGGTGGCGGAATCGTACCTGGGTCAATGGTTTTGATCGGTGGTGACCCAGGGATTGGAAAGTCAACGTTGCT
ACTTCAGGTATCAAGTCAGTTGGCAAATTCAGGCGGAACGATTTTGTACGTCGCTGGAGAAGAAAGTGCTTCACAGATTA
AGTTGCGAGCAGAACGCTTGGGAGTTCGTGGCGATGCGGATTTCTTCTTGTACCCAGAAACGGACATGAGCCAAATTCGT
AAGGCAATCGATGAAACAAAGCCGGATTATGTCATTATCGACTCAATCCAAACCATGCAACAACCAGATGTTTCATCGGC
GGTTGGATCAGTTGCACAAATTCGTGAGACGACCGCCGAATTGCTCCAAATCGCGAAGACGAACGGGATTACAATTTTTA
TTGTTGGTCACGTAACCAAGGATGGTGCCATCGCTGGACCAAAGATTTTGGAACACATGGTGGATACGGTACTTTACTTT
GAGGGTGATAATCAGCGTAGTTTCCGGTTGCTACGAGCTGTTAAGAATCGATTCGGTTCAACAAATGAGTTAGGGGTCTT
TGAAATGAACGAGGGTGGTTTGGCAGAAGTGACGAACCCATCTGGTTTATTCTTGGAAGACCGGCTCTCAGACGCCAGTG
GTTCGGCAGTGGTCGTTGCGATGGAAGGCTCTCGACCAATTTTGGTTGAAGTCCAGGCGTTGGTGACACCAACCGTCTTT
GGTAATGCCCAACGCACAGCAGCCGGCATTGATCGCAATCGTATTTCATTGTTGATGGCTGTCTTAGAAAAGCGTGCAAA
CTTGTTGTTGCAGAACCAGGATGCCTATGTGCGTGCTGCAGGTGGTGTAAAGCTAGACGAACCAGCAATCGACTTGGCCG
TTGCCGTTGCAATTGCTTCGAGTTACCGGGATAAGGGAACACGGGCAACTGACGCGTTTGTCGGGGAAATTGGGTTGACT
GGTGAAATCCGGCGGGTGCCAAATGTGGTTGATCGCATTCTTGAAGCGAAAAAACTTGGTTTCAAACGAGTATTTGTGCC
ACAGCATTCAGTTGATACAATGAAAGATATACCGGGCATTCAAATTATCGGTGTGGCCACATTGGCAGATGCTTTACGGT
TGGCATTAGATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KBD6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

63.576

99.125

0.63
  radA Streptococcus mitis SK321

63.576

99.125

0.63
  radA Streptococcus pneumoniae Rx1

63.576

99.125

0.63
  radA Streptococcus pneumoniae D39

63.576

99.125

0.63
  radA Streptococcus pneumoniae R6

63.576

99.125

0.63
  radA Streptococcus pneumoniae TIGR4

63.576

99.125

0.63
  radA Bacillus subtilis subsp. subtilis str. 168

59.737

100

0.597

Multiple sequence alignment