Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CEQ13_RS17990 Genome accession   NZ_CP027426
Coordinates   3499692..3500315 (+) Length   207 a.a.
NCBI ID   WP_004100775.1    Uniprot ID   A0AAD3YQU3
Organism   Klebsiella oxytoca strain FDAARGOS_335     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3494692..3505315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ13_RS17970 (CEQ13_17975) - 3494791..3496548 (-) 1758 WP_004111904.1 Lon protease family protein -
  CEQ13_RS17975 (CEQ13_17980) matP 3496734..3497186 (+) 453 WP_004100768.1 macrodomain Ter protein MatP -
  CEQ13_RS17980 (CEQ13_17985) ompA 3497297..3498367 (-) 1071 WP_032728667.1 porin OmpA -
  CEQ13_RS17985 (CEQ13_17990) sulA 3498721..3499230 (-) 510 WP_105890005.1 SOS-induced cell division inhibitor SulA -
  CEQ13_RS17990 (CEQ13_17995) sxy/tfoX 3499692..3500315 (+) 624 WP_004100775.1 TfoX/Sxy family DNA transformation protein Regulator
  CEQ13_RS17995 (CEQ13_18000) yccS 3500303..3502438 (-) 2136 WP_105890006.1 YccS family putative transporter -
  CEQ13_RS18000 (CEQ13_18005) - 3502456..3502902 (-) 447 WP_004100782.1 YccF domain-containing protein -
  CEQ13_RS18005 (CEQ13_18010) helD 3503025..3505079 (+) 2055 WP_105890007.1 DNA helicase IV -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23688.71 Da        Isoelectric Point: 10.2095

>NTDB_id=277068 CEQ13_RS17990 WP_004100775.1 3499692..3500315(+) (sxy/tfoX) [Klebsiella oxytoca strain FDAARGOS_335]
MKKLVCLRIHQFRACLSPLGKISCRPLFGGYSLAIDNTVFAMMAEGEIYLRVCEQSAQYRVAHKNPLLKMQKNGRLVALK
YYHIDEGLWRDSKMLFHLSALSLQTARNEKHRQRHSGRLKNLPNISFHMELQLINSGIKDELTLRKIGAKEAWLRLRKMN
KALTVNVLYSLEGAIAGVHAATLPTQQRQELEEWAAVQVQEMEAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=277068 CEQ13_RS17990 WP_004100775.1 3499692..3500315(+) (sxy/tfoX) [Klebsiella oxytoca strain FDAARGOS_335]
ATGAAGAAACTCGTATGTCTTAGGATCCATCAGTTTCGGGCATGTTTGTCTCCATTAGGAAAAATAAGCTGTCGGCCCTT
ATTTGGTGGCTATAGCCTGGCGATAGATAATACCGTGTTTGCCATGATGGCTGAGGGGGAGATCTATCTTCGGGTTTGTG
AGCAGAGTGCGCAGTATCGCGTGGCGCATAAAAACCCGCTGTTGAAGATGCAGAAGAATGGTCGTCTGGTTGCGCTTAAG
TACTATCATATAGATGAAGGGCTTTGGCGTGACAGCAAAATGCTTTTTCATTTATCAGCACTATCATTACAGACCGCTCG
TAATGAAAAACATCGGCAGCGACATTCCGGAAGATTAAAGAATCTTCCAAATATTAGTTTTCACATGGAGCTCCAGTTGA
TTAATTCAGGTATCAAAGATGAATTAACGCTGCGAAAAATTGGCGCGAAAGAAGCCTGGCTCAGACTACGAAAAATGAAT
AAAGCGCTAACGGTAAACGTCCTTTATTCATTAGAGGGAGCTATTGCGGGCGTGCATGCGGCCACGCTCCCGACGCAACA
GCGTCAGGAGCTTGAGGAGTGGGCGGCGGTACAGGTACAGGAGATGGAGGCCTACTCAGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(15-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.308

94.203

0.493

Multiple sequence alignment