Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CEQ07_RS09620 | Genome accession | NZ_CP027417 |
| Coordinates | 2014305..2015543 (-) | Length | 412 a.a. |
| NCBI ID | WP_105885707.1 | Uniprot ID | - |
| Organism | Oligella urethralis strain FDAARGOS_329 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2009305..2020543
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEQ07_RS09595 (CEQ07_09600) | nusB | 2010044..2010487 (-) | 444 | WP_083290702.1 | transcription antitermination factor NusB | - |
| CEQ07_RS09600 (CEQ07_09605) | ribH | 2010499..2011038 (-) | 540 | WP_105885704.1 | 6,7-dimethyl-8-ribityllumazine synthase | - |
| CEQ07_RS09605 (CEQ07_09610) | ribBA | 2011083..2012270 (-) | 1188 | WP_105885963.1 | bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II | - |
| CEQ07_RS09610 (CEQ07_09615) | - | 2012632..2013123 (+) | 492 | WP_105885705.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CEQ07_RS09615 (CEQ07_09620) | - | 2013128..2014261 (+) | 1134 | WP_105885706.1 | CYTH domain-containing protein | - |
| CEQ07_RS09620 (CEQ07_09625) | pilA | 2014305..2015543 (-) | 1239 | WP_105885707.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| CEQ07_RS09625 (CEQ07_09630) | - | 2015659..2016255 (+) | 597 | WP_105885708.1 | RsmD family RNA methyltransferase | - |
| CEQ07_RS09630 (CEQ07_09635) | coaD | 2016298..2016852 (+) | 555 | WP_070475551.1 | pantetheine-phosphate adenylyltransferase | - |
| CEQ07_RS09635 (CEQ07_09640) | - | 2016875..2017138 (+) | 264 | WP_026156768.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| CEQ07_RS09640 (CEQ07_09645) | - | 2017212..2019641 (-) | 2430 | WP_105885709.1 | AsmA family protein | - |
Sequence
Protein
Download Length: 412 a.a. Molecular weight: 43447.43 Da Isoelectric Point: 4.8782
>NTDB_id=277031 CEQ07_RS09620 WP_105885707.1 2014305..2015543(-) (pilA) [Oligella urethralis strain FDAARGOS_329]
MFRFFKRKKAKEENQASQEAEVAQAHEQEEPVTTSTDTVTAETVEDPAVARERAETVAPTVEASATPAPLEPQPEVLVTE
VEAEAEASSPVPVAHAEVAPSPVVTEAAPAKSSWMQRLRQGLSRTGSSIGSLFVGVKVDEDLFEELEMALLMADAGIEAT
ESLLAKLRSKVKQQRIEDAAQVKEALKALLSEHLKPLEKDFMLPLDGTSVVMIAGVNGAGKTTSIGKLAHHFQAAGASVL
LAAGDTFRAAAREQLVEWGKRNQVAVIAQDGGDPAAVAFDAVNAGKARKANVVMVDTAGRLPTQLHLMEELKKIKRVINK
ADSEAPHEVLLVVDGNTGQNVITQIKAFDAALGLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGESLHDLQP
FSAAEFANALLG
MFRFFKRKKAKEENQASQEAEVAQAHEQEEPVTTSTDTVTAETVEDPAVARERAETVAPTVEASATPAPLEPQPEVLVTE
VEAEAEASSPVPVAHAEVAPSPVVTEAAPAKSSWMQRLRQGLSRTGSSIGSLFVGVKVDEDLFEELEMALLMADAGIEAT
ESLLAKLRSKVKQQRIEDAAQVKEALKALLSEHLKPLEKDFMLPLDGTSVVMIAGVNGAGKTTSIGKLAHHFQAAGASVL
LAAGDTFRAAAREQLVEWGKRNQVAVIAQDGGDPAAVAFDAVNAGKARKANVVMVDTAGRLPTQLHLMEELKKIKRVINK
ADSEAPHEVLLVVDGNTGQNVITQIKAFDAALGLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGESLHDLQP
FSAAEFANALLG
Nucleotide
Download Length: 1239 bp
>NTDB_id=277031 CEQ07_RS09620 WP_105885707.1 2014305..2015543(-) (pilA) [Oligella urethralis strain FDAARGOS_329]
ATGTTTAGATTTTTTAAGCGTAAAAAAGCAAAAGAAGAAAATCAAGCGAGTCAAGAAGCTGAAGTTGCGCAGGCGCATGA
ACAGGAGGAGCCCGTCACCACCAGTACTGACACGGTGACGGCGGAAACTGTGGAGGATCCTGCCGTCGCGAGAGAGCGCG
CGGAGACGGTGGCGCCCACAGTTGAGGCGAGTGCCACACCCGCGCCCCTTGAACCGCAGCCCGAAGTGCTTGTGACTGAG
GTTGAAGCGGAGGCTGAAGCAAGCTCTCCGGTGCCAGTCGCTCATGCTGAAGTGGCGCCAAGTCCAGTGGTGACTGAGGC
AGCGCCAGCCAAAAGTTCGTGGATGCAGCGCTTGCGTCAGGGCCTTTCTCGTACAGGCTCCAGCATTGGTTCACTGTTTG
TGGGTGTCAAGGTTGACGAGGACTTATTTGAAGAGCTGGAAATGGCATTGCTGATGGCGGATGCCGGCATTGAGGCGACC
GAGTCCTTGTTAGCTAAGCTCAGATCCAAGGTTAAGCAACAGCGTATTGAAGATGCTGCGCAGGTTAAGGAAGCGCTAAA
AGCCTTATTAAGCGAGCATTTAAAGCCCTTAGAAAAAGACTTTATGTTGCCCTTGGATGGCACCTCAGTCGTCATGATTG
CTGGCGTTAACGGTGCGGGTAAAACCACCTCCATCGGTAAGTTAGCACATCATTTCCAAGCCGCTGGTGCGAGTGTGTTG
TTAGCCGCCGGGGATACTTTCCGAGCAGCGGCACGGGAGCAATTGGTCGAATGGGGCAAGCGCAATCAGGTGGCGGTGAT
AGCCCAAGACGGCGGGGATCCTGCCGCCGTTGCCTTTGATGCGGTCAATGCCGGTAAAGCCCGTAAGGCCAATGTGGTGA
TGGTCGATACGGCCGGACGTTTGCCGACCCAATTGCACTTGATGGAAGAGCTTAAAAAAATTAAGCGAGTGATTAATAAG
GCCGATAGCGAAGCACCGCATGAGGTATTACTAGTGGTTGATGGTAATACAGGCCAAAACGTGATTACTCAAATTAAGGC
CTTTGATGCGGCCTTGGGATTAACCGGTTTAGTAGTGACCAAATTAGACGGCACGGCCAAGGGTGGCACCCTGGCCGCTG
TGGCGGCAGGTAGCCAAGGCGTGCGACCGATTCCGGTCTATTGGATTGGGGTTGGTGAGTCATTGCATGATCTTCAGCCC
TTTTCAGCGGCTGAGTTTGCCAATGCCTTGCTTGGCTAA
ATGTTTAGATTTTTTAAGCGTAAAAAAGCAAAAGAAGAAAATCAAGCGAGTCAAGAAGCTGAAGTTGCGCAGGCGCATGA
ACAGGAGGAGCCCGTCACCACCAGTACTGACACGGTGACGGCGGAAACTGTGGAGGATCCTGCCGTCGCGAGAGAGCGCG
CGGAGACGGTGGCGCCCACAGTTGAGGCGAGTGCCACACCCGCGCCCCTTGAACCGCAGCCCGAAGTGCTTGTGACTGAG
GTTGAAGCGGAGGCTGAAGCAAGCTCTCCGGTGCCAGTCGCTCATGCTGAAGTGGCGCCAAGTCCAGTGGTGACTGAGGC
AGCGCCAGCCAAAAGTTCGTGGATGCAGCGCTTGCGTCAGGGCCTTTCTCGTACAGGCTCCAGCATTGGTTCACTGTTTG
TGGGTGTCAAGGTTGACGAGGACTTATTTGAAGAGCTGGAAATGGCATTGCTGATGGCGGATGCCGGCATTGAGGCGACC
GAGTCCTTGTTAGCTAAGCTCAGATCCAAGGTTAAGCAACAGCGTATTGAAGATGCTGCGCAGGTTAAGGAAGCGCTAAA
AGCCTTATTAAGCGAGCATTTAAAGCCCTTAGAAAAAGACTTTATGTTGCCCTTGGATGGCACCTCAGTCGTCATGATTG
CTGGCGTTAACGGTGCGGGTAAAACCACCTCCATCGGTAAGTTAGCACATCATTTCCAAGCCGCTGGTGCGAGTGTGTTG
TTAGCCGCCGGGGATACTTTCCGAGCAGCGGCACGGGAGCAATTGGTCGAATGGGGCAAGCGCAATCAGGTGGCGGTGAT
AGCCCAAGACGGCGGGGATCCTGCCGCCGTTGCCTTTGATGCGGTCAATGCCGGTAAAGCCCGTAAGGCCAATGTGGTGA
TGGTCGATACGGCCGGACGTTTGCCGACCCAATTGCACTTGATGGAAGAGCTTAAAAAAATTAAGCGAGTGATTAATAAG
GCCGATAGCGAAGCACCGCATGAGGTATTACTAGTGGTTGATGGTAATACAGGCCAAAACGTGATTACTCAAATTAAGGC
CTTTGATGCGGCCTTGGGATTAACCGGTTTAGTAGTGACCAAATTAGACGGCACGGCCAAGGGTGGCACCCTGGCCGCTG
TGGCGGCAGGTAGCCAAGGCGTGCGACCGATTCCGGTCTATTGGATTGGGGTTGGTGAGTCATTGCATGATCTTCAGCCC
TTTTCAGCGGCTGAGTTTGCCAATGCCTTGCTTGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
49.649 |
100 |
0.515 |