Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   CFN54_RS05615 Genome accession   NZ_CP032635
Coordinates   1118009..1119454 (-) Length   481 a.a.
NCBI ID   WP_035145829.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain ZFM225     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1113009..1124454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFN54_RS05590 (CFN54_05590) - 1113160..1113435 (-) 276 WP_011374717.1 HU family DNA-binding protein -
  CFN54_RS05595 (CFN54_05595) der 1113642..1114952 (-) 1311 WP_016265173.1 ribosome biogenesis GTPase Der -
  CFN54_RS05600 (CFN54_05600) rpsA 1115186..1116397 (-) 1212 WP_016265174.1 30S ribosomal protein S1 -
  CFN54_RS05605 (CFN54_05605) cmk 1116492..1117151 (-) 660 WP_016265175.1 (d)CMP kinase -
  CFN54_RS05610 (CFN54_05610) - 1117218..1117940 (-) 723 WP_035145827.1 LysM peptidoglycan-binding domain-containing protein -
  CFN54_RS05615 (CFN54_05615) recS 1118009..1119454 (-) 1446 WP_035145829.1 RecQ family ATP-dependent DNA helicase Machinery gene
  CFN54_RS05620 (CFN54_05620) - 1119451..1120479 (-) 1029 WP_094365736.1 helix-turn-helix domain-containing protein -
  CFN54_RS05625 (CFN54_05625) - 1120516..1120746 (+) 231 WP_016265179.1 ferredoxin -
  CFN54_RS05630 (CFN54_05630) - 1120822..1121397 (-) 576 WP_016265180.1 ECF transporter S component -
  CFN54_RS05635 (CFN54_05635) - 1121713..1122483 (-) 771 WP_011374726.1 pseudouridine synthase -
  CFN54_RS05640 (CFN54_05640) scpB 1122486..1123109 (-) 624 WP_035145831.1 SMC-Scp complex subunit ScpB -
  CFN54_RS05645 (CFN54_05645) - 1123093..1123848 (-) 756 WP_035145834.1 segregation and condensation protein A -
  CFN54_RS05650 (CFN54_05650) - 1123857..1124225 (-) 369 WP_016265184.1 hypothetical protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 54583.33 Da        Isoelectric Point: 5.2751

>NTDB_id=277029 CFN54_RS05615 WP_035145829.1 1118009..1119454(-) (recS) [Latilactobacillus sakei strain ZFM225]
MTSEQLIYDQLAQHFGYSTFKPGQLAVIQSVLAGQETLAVLPTGTGKSLCYQLPAYILGHTTVIVSPLIALMQDQVAQLN
YQGEKRAVAINSNLVPQQKHQLLTHLADYRFIFMAPETISQPEVIQALQRCQIDLFVVDEAHCISQWGIDFRPDYLVLAT
IKAQLQPTATLALTATANDRVRQDILNKLALKNAAQIMTSVDRPNIYLGVSQQPDEQAKNQFLANLVQKSQGPGIIYFSS
RQKTMEIAAFLQQETDLKIAYYHAALSTQERYLIQQQFMQGQLDLICTTNAFGMGINKADIRYVIHYHLPQNIESYLQEI
GRAGRDGQPAYALVLTTPQDLYLQQSLVSFGIPEPGLIRRYYQEPQLFKQSQGNEFELLRRYQQLGMTEEEVIKLLDNRQ
TEKQFSLQTMLDYLTLKGCRRQFIVNYFDQAPKTIEHSETCCGEQDSTDFLAQLDLEQAINYKTTETVVLTGWTGILDQL
F

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=277029 CFN54_RS05615 WP_035145829.1 1118009..1119454(-) (recS) [Latilactobacillus sakei strain ZFM225]
ATGACTTCTGAACAACTCATTTATGACCAGTTAGCGCAGCACTTTGGCTATTCAACCTTTAAACCGGGCCAGTTAGCGGT
TATTCAGTCGGTACTTGCTGGGCAGGAGACATTAGCCGTTTTACCAACCGGGACTGGGAAGTCGCTGTGTTATCAATTAC
CGGCCTATATCTTGGGGCATACGACTGTGATTGTCTCGCCACTAATCGCATTAATGCAAGATCAGGTCGCCCAATTGAAT
TACCAAGGGGAAAAGCGAGCTGTCGCCATTAATTCTAATTTAGTGCCTCAGCAAAAACACCAGTTACTGACGCATTTAGC
GGATTACCGCTTTATTTTTATGGCACCGGAGACCATCAGTCAACCAGAAGTGATTCAGGCGCTTCAACGTTGTCAAATCG
ATTTGTTTGTGGTTGATGAGGCCCATTGTATTTCACAGTGGGGAATTGATTTTAGACCGGACTATTTAGTTTTAGCAACC
ATCAAGGCCCAATTACAGCCAACTGCAACACTGGCTTTGACGGCGACCGCCAATGACCGTGTACGCCAAGATATTTTGAA
TAAGTTGGCGTTAAAAAACGCGGCCCAAATCATGACCTCTGTTGATCGCCCCAATATCTATTTGGGCGTGAGCCAACAAC
CTGATGAACAAGCGAAGAACCAATTTTTAGCCAACTTAGTGCAAAAAAGCCAGGGTCCCGGGATTATTTACTTTTCAAGT
CGGCAAAAGACGATGGAGATTGCGGCCTTTTTGCAGCAAGAAACTGATCTGAAGATTGCGTATTACCACGCGGCGTTATC
AACCCAGGAGCGGTATTTGATTCAACAACAATTTATGCAAGGGCAACTTGATTTGATTTGTACAACCAATGCTTTTGGGA
TGGGGATTAATAAGGCGGATATTCGCTATGTGATTCATTATCACCTGCCACAAAACATCGAAAGTTACTTGCAAGAAATC
GGACGGGCAGGCCGAGATGGGCAACCAGCCTATGCTTTAGTCCTAACAACTCCGCAAGATTTATATTTACAACAATCACT
CGTTTCATTTGGAATTCCGGAACCAGGCCTCATTCGGCGCTATTATCAGGAACCGCAATTATTTAAACAAAGTCAAGGCA
ATGAATTTGAACTACTACGTCGCTACCAGCAACTGGGGATGACCGAAGAAGAGGTCATTAAGTTATTGGATAATCGTCAA
ACCGAAAAGCAGTTTTCACTACAAACGATGCTGGATTATTTGACCCTCAAGGGCTGTCGACGGCAATTTATTGTGAACTA
TTTTGACCAGGCACCAAAGACGATTGAACACAGCGAAACGTGTTGCGGGGAACAGGATTCGACCGACTTTTTAGCACAAT
TAGACTTAGAACAAGCTATTAATTATAAAACCACTGAAACCGTTGTTCTGACTGGTTGGACGGGAATCTTGGACCAATTA
TTTTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(22-181)

Helicase conserved C-terminal domain (Helicase_C)

(219-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

42.699

93.971

0.401