Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CEQ07_RS07405 Genome accession   NZ_CP027417
Coordinates   1558645..1560015 (-) Length   456 a.a.
NCBI ID   WP_048767541.1    Uniprot ID   -
Organism   Oligella urethralis strain FDAARGOS_329     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1553645..1565015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ07_RS07380 (CEQ07_07385) - 1553733..1554644 (-) 912 WP_018026169.1 ABC transporter permease subunit -
  CEQ07_RS07385 (CEQ07_07390) - 1554641..1555762 (-) 1122 WP_048767536.1 ABC transporter ATP-binding protein -
  CEQ07_RS07390 (CEQ07_07395) - 1555869..1556966 (-) 1098 WP_018026171.1 polyamine ABC transporter substrate-binding protein -
  CEQ07_RS07395 (CEQ07_07400) - 1557031..1557798 (-) 768 WP_105885501.1 3-deoxy-D-manno-octulosonic acid kinase -
  CEQ07_RS07400 (CEQ07_07405) - 1557870..1558616 (-) 747 WP_065420986.1 sulfite exporter TauE/SafE family protein -
  CEQ07_RS07405 (CEQ07_07410) radA 1558645..1560015 (-) 1371 WP_048767541.1 DNA repair protein RadA Machinery gene
  CEQ07_RS07410 (CEQ07_07415) alr 1560023..1561177 (-) 1155 WP_036558349.1 alanine racemase -
  CEQ07_RS07415 (CEQ07_07420) - 1561387..1562277 (+) 891 WP_105885502.1 squalene/phytoene synthase family protein -
  CEQ07_RS07420 (CEQ07_07425) - 1562286..1562915 (-) 630 WP_105885503.1 flavin reductase family protein -
  CEQ07_RS07425 (CEQ07_07430) - 1562943..1563356 (-) 414 WP_018026178.1 hypothetical protein -
  CEQ07_RS07430 (CEQ07_07435) thrC 1563435..1564853 (-) 1419 WP_105885504.1 threonine synthase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49346.75 Da        Isoelectric Point: 7.7545

>NTDB_id=277028 CEQ07_RS07405 WP_048767541.1 1558645..1560015(-) (radA) [Oligella urethralis strain FDAARGOS_329]
MAKARTIYSCQSCGGTTLRWQGQCPHCREWNTLEETREQPLSKAAVANRFEHLAASSTVRRLADVQMQDTPRMSTGLAEF
DRVLGGGLVAGSVVLIGGDPGIGKSTLLLQVLTSLSFSQNVLYVTGEESDQQVALRAKRLELNTESVQLLAEIQLEAIQR
AVAEVSPKVVVIDSIQTMFSSELTAAPGSVSQVRECAAQLTRLAKQNDIALVMIGHVTKDGSLAGPRVLEHIVDTVLYFE
GDSHSSHRLIRAFKNRFGAVNELGVFAMTDKGLRGINNPSAIFLSQHSSDIAGSCVMATQEGTRPLLVEIQALADTAHVP
NPRRLSLGLDGGRLAMLLAVLHRHGGIPTFNQDVFINAVGGVRISETASDLPVILALISSLRDKPLPKGFFAFGEVGLAG
EIRPATRGQERLKEAAKLGFEIAMIPKHNAPKQPLPGLTIWPVSRLVDIFDYLRRE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=277028 CEQ07_RS07405 WP_048767541.1 1558645..1560015(-) (radA) [Oligella urethralis strain FDAARGOS_329]
ATGGCAAAAGCAAGAACAATCTACAGTTGTCAATCCTGTGGTGGTACCACGCTGAGATGGCAAGGGCAATGTCCCCATTG
TCGAGAGTGGAATACCTTAGAGGAAACACGTGAACAGCCCCTTAGCAAAGCCGCTGTGGCTAATCGTTTTGAGCATTTGG
CAGCTAGCAGCACGGTGCGTCGTTTGGCTGATGTACAGATGCAGGATACGCCGCGTATGAGTACCGGTTTGGCTGAGTTT
GACCGCGTTTTGGGTGGTGGCTTAGTCGCGGGTTCGGTGGTACTCATTGGTGGTGATCCAGGGATCGGTAAATCGACTCT
GTTGCTTCAAGTCTTAACTAGTTTATCCTTTAGCCAAAATGTATTGTATGTTACAGGTGAGGAATCGGATCAGCAGGTCG
CCTTACGTGCCAAGCGCTTGGAATTAAATACCGAGTCAGTACAGTTATTAGCGGAAATTCAACTGGAAGCAATTCAACGC
GCGGTGGCCGAGGTAAGTCCTAAAGTGGTTGTGATTGACTCCATTCAGACCATGTTTTCCTCGGAGCTGACCGCAGCCCC
CGGTTCAGTCTCACAGGTGCGTGAATGTGCTGCACAACTGACGCGTTTAGCAAAGCAAAACGATATAGCCTTAGTGATGA
TTGGTCATGTGACCAAGGATGGCAGTCTGGCCGGACCGCGTGTGCTGGAGCATATTGTTGACACGGTGTTATATTTTGAG
GGCGATAGTCATTCTTCGCATCGCTTGATTCGTGCTTTTAAAAACCGTTTTGGCGCGGTCAATGAATTAGGTGTTTTTGC
CATGACGGATAAGGGCTTGCGAGGCATTAATAATCCCTCGGCGATTTTCTTATCCCAGCATTCTAGTGATATTGCAGGTT
CGTGTGTGATGGCGACTCAAGAGGGCACACGTCCCTTATTGGTGGAGATTCAGGCCTTGGCCGATACTGCGCATGTACCT
AATCCGCGGCGTCTTAGTCTAGGCTTGGATGGGGGACGTTTAGCTATGCTATTAGCGGTCTTACATCGGCATGGCGGTAT
CCCCACCTTTAATCAGGATGTGTTTATTAATGCCGTGGGCGGGGTCCGTATCAGTGAAACTGCTTCCGACTTGCCGGTGA
TTTTGGCGTTAATTTCTTCTTTGCGTGATAAACCACTGCCCAAGGGCTTTTTTGCTTTTGGTGAGGTAGGTTTAGCTGGT
GAAATTCGACCCGCCACCCGTGGCCAGGAGCGCCTTAAAGAAGCCGCAAAATTAGGCTTTGAAATTGCCATGATCCCTAA
GCATAATGCACCGAAGCAGCCACTGCCGGGACTGACTATTTGGCCAGTTTCTCGTCTTGTTGATATTTTTGACTACTTAA
GAAGAGAGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.459

95.614

0.482
  radA Streptococcus pneumoniae Rx1

46.911

95.833

0.45
  radA Streptococcus pneumoniae D39

46.911

95.833

0.45
  radA Streptococcus pneumoniae R6

46.911

95.833

0.45
  radA Streptococcus pneumoniae TIGR4

46.911

95.833

0.45
  radA Streptococcus mitis SK321

47.209

94.298

0.445
  radA Streptococcus mitis NCTC 12261

47.209

94.298

0.445

Multiple sequence alignment