Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   CFK78_RS08075 Genome accession   NZ_CP032633
Coordinates   1605634..1606347 (+) Length   237 a.a.
NCBI ID   WP_025016358.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain ZFM220     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1600634..1611347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK78_RS08055 (CFK78_08055) - 1601006..1601806 (-) 801 WP_035146179.1 ChbG/HpnK family deacetylase -
  CFK78_RS08060 (CFK78_08060) - 1601815..1602306 (-) 492 WP_016265308.1 PTS sugar transporter subunit IIA -
  CFK78_RS08065 (CFK78_08065) - 1602320..1603969 (-) 1650 WP_025016359.1 alpha,alpha-phosphotrehalase -
  CFK78_RS08070 (CFK78_08070) - 1603983..1605461 (-) 1479 WP_051524301.1 PTS transporter subunit EIIC -
  CFK78_RS08075 (CFK78_08075) treR 1605634..1606347 (+) 714 WP_025016358.1 trehalose operon repressor Regulator
  CFK78_RS08080 (CFK78_08080) - 1606411..1606848 (-) 438 WP_061827049.1 hypothetical protein -
  CFK78_RS08085 (CFK78_08085) - 1606953..1609499 (-) 2547 WP_120761054.1 YfhO family protein -
  CFK78_RS08090 (CFK78_08090) - 1609666..1610532 (-) 867 WP_056948755.1 GRP family sugar transporter -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26826.65 Da        Isoelectric Point: 6.5879

>NTDB_id=276964 CFK78_RS08075 WP_025016358.1 1605634..1606347(+) (treR) [Latilactobacillus sakei strain ZFM220]
MSKKYEIIYRELVHKITNHVYPANSFLPSENELATAYGTSRETVRKALASLLENGFIHKIKGKGSLVLDFDKYAFPISGL
TSYRELDSLFEMHTQTTVLQLQKATVPQAPFHLDPTEILPATYIQRLRTVDGEPIVIDNDYVLTSVVPEISRVVAQDSLY
HYFEQELGLTIGYGNKEFTVIPATEEQCAILKLAPNSAVVSVKGITHLQDNTLIQFTESIHRADKFKFIEHARRQSI

Nucleotide


Download         Length: 714 bp        

>NTDB_id=276964 CFK78_RS08075 WP_025016358.1 1605634..1606347(+) (treR) [Latilactobacillus sakei strain ZFM220]
ATGTCGAAAAAATATGAAATAATCTACCGCGAACTTGTCCATAAAATTACGAACCATGTTTATCCAGCCAACTCATTCTT
ACCCAGCGAAAACGAACTCGCAACAGCGTATGGTACCTCACGCGAAACAGTCCGTAAAGCACTCGCTAGCCTTTTAGAAA
ATGGCTTCATTCATAAGATCAAAGGCAAAGGCTCTTTAGTCCTTGATTTTGATAAATACGCCTTTCCCATTTCCGGCTTG
ACCAGTTACCGCGAATTGGATAGTCTCTTTGAAATGCACACGCAAACAACAGTCCTACAACTCCAAAAAGCAACAGTCCC
ACAAGCGCCTTTTCATTTAGATCCCACAGAGATTCTGCCCGCGACCTATATTCAACGGTTACGGACCGTTGATGGTGAAC
CAATTGTTATCGATAACGACTACGTTCTAACCAGTGTTGTCCCAGAAATCTCACGGGTAGTCGCTCAGGATTCACTTTAT
CACTACTTTGAACAAGAATTGGGTCTAACTATTGGTTATGGGAATAAAGAATTCACTGTTATCCCTGCAACCGAAGAACA
GTGTGCCATCTTAAAACTCGCCCCTAATAGTGCGGTCGTTAGTGTTAAAGGTATCACTCATCTTCAGGATAATACCTTAA
TTCAATTTACCGAATCCATTCACCGGGCTGATAAATTTAAGTTTATTGAACATGCGCGCCGCCAATCAATTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(5-67)

UTRA domain (UTRA)

(120-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

37.339

98.312

0.367