Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CFK78_RS05195 Genome accession   NZ_CP032633
Coordinates   1050870..1052573 (+) Length   567 a.a.
NCBI ID   WP_016264857.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain ZFM220     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1045870..1057573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK78_RS05165 (CFK78_05165) folD 1046152..1047003 (+) 852 WP_082267624.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  CFK78_RS05170 (CFK78_05170) xseA 1046996..1048345 (+) 1350 WP_016264852.1 exodeoxyribonuclease VII large subunit -
  CFK78_RS05175 (CFK78_05175) - 1048347..1048577 (+) 231 WP_016264853.1 exodeoxyribonuclease VII small subunit -
  CFK78_RS05180 (CFK78_05180) - 1048577..1049449 (+) 873 WP_016264854.1 polyprenyl synthetase family protein -
  CFK78_RS05185 (CFK78_05185) - 1049458..1050288 (+) 831 WP_035146584.1 TlyA family RNA methyltransferase -
  CFK78_RS05190 (CFK78_05190) argR 1050368..1050820 (+) 453 WP_016264856.1 arginine repressor -
  CFK78_RS05195 (CFK78_05195) recN 1050870..1052573 (+) 1704 WP_016264857.1 DNA repair protein RecN Machinery gene
  CFK78_RS05200 (CFK78_05200) - 1052632..1052955 (-) 324 WP_016264858.1 hypothetical protein -
  CFK78_RS05205 (CFK78_05205) - 1053078..1053302 (+) 225 WP_016264859.1 YdbC family protein -
  CFK78_RS05210 (CFK78_05210) gmk 1053375..1053986 (+) 612 WP_011374394.1 guanylate kinase -
  CFK78_RS05215 (CFK78_05215) rpoZ 1053991..1054248 (+) 258 WP_011374395.1 DNA-directed RNA polymerase subunit omega -
  CFK78_RS05220 (CFK78_05220) coaBC 1054337..1055554 (+) 1218 WP_016264860.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 63236.23 Da        Isoelectric Point: 4.7021

>NTDB_id=276935 CFK78_RS05195 WP_016264857.1 1050870..1052573(+) (recN) [Latilactobacillus sakei strain ZFM220]
MLQELVIHDFAIIDQLAISFDEGMTVLSGETGAGKSIIIDAVGLLAGGRGSQDFIRTGAKKATLEGLFTLPENATTAALL
AEYGIEHDDQTILLQRDLALNGHNVCRVNGHLVNTTTLKKIGETLVDIHGQNEHQELMYPDRHLGLLDEFAHTTLASAKA
AYQETYQAYRQTEKALKKKQQNEQEWAQRLDMLKFQTNEIDAAQLQPDEESKLIEERAKLSNFQRINQALQASRAILSGE
EGNALDQIAIAMNQMQEIAELDPEFKRIADNLQTGYYTLQDSGSDISREVDNLEWDEARLDEIEQRLETINNLEHKYGDS
IPEILAYGAQITKELQAMQATEANASELEQQFEQQQAQLLEEAAVLSEKRQAAAQQLEKAVHQQLKALYMAKTVFKVEFA
TVDNQQFMRSGRDKVEFYIQPNPGEKLRPLAKTASGGELSRLMLALKTIFSESQGVTSIIFDEVDTGVSGRVAQAIANKI
SEIAQHSQVLCITHLPQVAAMSDHQYQIQKQIKQNRTETSIQKVTGKKRVAELARMLAGTEVTELTLEHAQELVDLAETA
KAQIRQA

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=276935 CFK78_RS05195 WP_016264857.1 1050870..1052573(+) (recN) [Latilactobacillus sakei strain ZFM220]
ATGCTACAAGAATTAGTCATTCACGACTTTGCAATTATAGATCAATTGGCCATTAGTTTCGATGAAGGGATGACGGTTCT
TTCTGGTGAAACAGGGGCCGGGAAATCGATTATTATCGACGCGGTTGGCCTGCTCGCTGGTGGTCGAGGGTCACAGGATT
TTATCCGAACCGGTGCGAAAAAAGCGACGTTAGAGGGCTTGTTTACATTACCCGAAAACGCCACGACTGCCGCGCTTTTA
GCTGAATATGGGATTGAACACGATGATCAAACCATTTTATTACAACGTGATTTGGCATTAAACGGGCATAATGTTTGCCG
CGTTAATGGGCATCTGGTCAATACCACGACGCTTAAAAAGATTGGAGAAACATTAGTTGATATTCACGGTCAAAACGAAC
ATCAAGAATTAATGTATCCTGATCGCCATCTAGGCTTGTTGGATGAGTTTGCCCACACAACCTTGGCGAGTGCTAAGGCG
GCCTATCAAGAAACCTATCAGGCTTACCGGCAAACGGAAAAAGCATTGAAGAAAAAGCAACAAAATGAGCAGGAATGGGC
CCAACGCCTTGATATGCTTAAATTTCAAACTAATGAAATTGACGCAGCGCAATTACAACCAGATGAAGAAAGTAAGTTAA
TCGAAGAACGCGCGAAACTCAGCAACTTCCAACGGATTAATCAGGCCTTGCAAGCTAGTCGCGCCATTTTATCTGGTGAG
GAAGGCAACGCGCTAGATCAAATCGCGATTGCAATGAATCAAATGCAAGAAATTGCGGAATTAGATCCTGAATTCAAAAG
AATTGCTGATAATCTACAAACAGGCTATTACACACTGCAAGATAGCGGTAGTGATATTAGTCGGGAAGTCGATAATCTTG
AATGGGACGAAGCACGCTTGGATGAAATTGAACAGCGCTTAGAAACAATCAATAATCTCGAACATAAATATGGCGATTCA
ATTCCTGAAATTTTGGCTTATGGGGCGCAAATTACCAAAGAATTGCAAGCAATGCAGGCCACCGAAGCCAATGCAAGCGA
ATTAGAGCAACAATTTGAACAACAACAAGCCCAATTGCTGGAAGAAGCAGCCGTTCTTTCTGAGAAACGCCAAGCAGCTG
CTCAACAGTTGGAAAAGGCTGTTCACCAACAACTCAAAGCGCTCTACATGGCTAAAACGGTTTTCAAAGTTGAATTTGCC
ACGGTTGATAATCAGCAATTTATGCGCAGCGGTCGGGACAAAGTTGAATTTTATATTCAACCTAATCCGGGTGAGAAGCT
ACGGCCGCTTGCCAAGACTGCTTCTGGTGGGGAATTATCCCGATTGATGTTGGCGCTTAAAACGATTTTCTCAGAATCAC
AAGGCGTTACCAGCATTATTTTTGATGAAGTTGATACTGGGGTCAGTGGGCGTGTTGCGCAAGCAATTGCCAATAAAATT
AGCGAAATTGCCCAACACTCACAAGTCCTCTGTATTACGCATTTGCCACAAGTAGCGGCGATGAGTGATCATCAATACCA
AATTCAAAAACAAATTAAACAAAACCGCACAGAAACATCAATCCAAAAGGTAACCGGTAAAAAACGCGTTGCTGAACTGG
CTCGTATGTTGGCGGGGACAGAAGTGACGGAATTAACGCTAGAACACGCCCAAGAATTAGTGGACCTCGCAGAAACTGCT
AAAGCACAGATTAGACAAGCTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

45.819

100

0.464