Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   CFK78_RS03350 Genome accession   NZ_CP032633
Coordinates   711939..714236 (-) Length   765 a.a.
NCBI ID   WP_035147301.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain ZFM220     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 706939..719236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK78_RS03320 (CFK78_03320) - 707669..708022 (+) 354 WP_016264604.1 PqqD family protein -
  CFK78_RS03325 (CFK78_03325) - 708080..709501 (+) 1422 WP_016264605.1 C69 family dipeptidase -
  CFK78_RS03330 (CFK78_03330) - 709576..710427 (+) 852 WP_016264606.1 YitT family protein -
  CFK78_RS03335 (CFK78_03335) - 710477..710692 (-) 216 WP_016264607.1 DUF2187 family protein -
  CFK78_RS03340 (CFK78_03340) - 710889..711731 (+) 843 WP_061827241.1 Cof-type HAD-IIB family hydrolase -
  CFK78_RS03350 (CFK78_03350) helD 711939..714236 (-) 2298 WP_035147301.1 RNA polymerase recycling motor HelD Machinery gene
  CFK78_RS03355 (CFK78_03355) trpS 714593..715609 (+) 1017 WP_061827240.1 tryptophan--tRNA ligase -
  CFK78_RS03360 (CFK78_03360) - 715763..717130 (+) 1368 WP_016264611.1 MATE family efflux transporter -
  CFK78_RS03365 (CFK78_03365) - 717123..717920 (+) 798 WP_016264612.1 DNA/RNA non-specific endonuclease -
  CFK78_RS03370 (CFK78_03370) - 717985..718620 (+) 636 WP_232321162.1 pentapeptide repeat-containing protein -

Sequence

Protein


Download         Length: 765 a.a.        Molecular weight: 86952.16 Da        Isoelectric Point: 4.6292

>NTDB_id=276920 CFK78_RS03350 WP_035147301.1 711939..714236(-) (helD) [Latilactobacillus sakei strain ZFM220]
MLQEETQQQEQARVNLTVDQVNQRLTVINQQLDNAYNETKDIEQRYGDTTKVNITEVDDRMETNAAVQQQKQLVAAAVEN
EKLLTTQQKRLTDLVDSPYFGRIDINEDGEEESLYIGTATFINEQDQFLVYDWRAPIASIYYNGTLGTVSYDTPNGPVKV
DLTLKRQFKIKNGQIEHLFDTNETVGDELLQAVLGQQSDEYMQNIVATIQKEQNDIIRDTTADLLIVQGVAGSGKTSAVL
QRIAFLLYHSRSNLEADQMVLFSPNRLFSHYISDVLPSLGEKNMRQVTMAEFLSHRFSGLQVETLFDRFEKDQASFPEMT
QAMRRFKESAPFMQQIAAYVKQVSTQPLAFNDLYFEDRPFFTKAQINKIYLDLPHNMRPGDKFIATKNTLIKRLKRQINL
EVHLDWVAEKIDTLSDDDYRAIVGDREFDSGDLEQAFIAREIVQNYFADLYDAIYNDYFLDVYTEYQNFLRTACPETIPS
AVWAAMIETVAQNNERHLVGLSDAAPILYLRDLLTDSGQNHSIQYLFVDEMQDYSIAQFVYLQHAFPNAKFTILGDYAQD
VFTATYQAGNFIERLCAAFPKLKTNQISLTKSYRATAPITNFAKALLPKETALQAFSRDGRLPRVITATKAASLNALTQE
IFHLQKRHATIAILTKDQQTARQLFASLTPDDQVTLISETTRSLPKGVLVLPLYLAKGLEFDAVIGYDISATTFGQASDV
DLLYTLMTRAMHDLTLLGIDTLSPLIADLDHQYYQSVTTTKETIA

Nucleotide


Download         Length: 2298 bp        

>NTDB_id=276920 CFK78_RS03350 WP_035147301.1 711939..714236(-) (helD) [Latilactobacillus sakei strain ZFM220]
ATGCTACAAGAAGAAACGCAACAACAAGAACAAGCTCGTGTTAATTTAACGGTTGACCAAGTCAATCAACGGCTAACGGT
TATCAACCAACAATTGGACAACGCCTATAATGAAACTAAAGATATTGAGCAACGTTACGGTGATACTACCAAGGTTAACA
TTACCGAAGTTGATGACCGGATGGAAACCAATGCCGCTGTCCAACAGCAAAAGCAACTGGTCGCAGCTGCTGTTGAAAAC
GAGAAACTCCTAACGACACAACAAAAACGACTAACGGATTTAGTTGACTCCCCCTATTTTGGCCGGATTGATATCAATGA
AGACGGTGAAGAAGAATCACTCTACATCGGAACCGCCACTTTTATCAACGAACAAGACCAATTTTTAGTTTATGATTGGC
GAGCACCCATCGCTAGTATCTATTATAACGGCACACTGGGAACCGTCAGTTACGATACGCCCAACGGCCCCGTTAAAGTT
GACTTAACTTTAAAACGGCAGTTCAAGATTAAAAACGGTCAGATTGAACACCTCTTTGATACAAACGAAACGGTTGGCGA
CGAACTCCTGCAAGCCGTCCTCGGCCAACAAAGCGACGAATATATGCAAAATATTGTCGCAACAATTCAAAAAGAACAAA
ACGATATTATTCGTGATACGACTGCCGATTTACTAATCGTTCAAGGCGTCGCCGGTAGTGGTAAGACTTCTGCGGTTTTA
CAACGGATTGCCTTCTTACTCTATCACAGTCGTAGCAACTTAGAAGCCGACCAGATGGTTCTTTTTTCACCTAACCGTTT
ATTCAGCCATTACATTTCTGACGTTCTCCCCAGCTTAGGCGAGAAAAACATGCGCCAAGTGACCATGGCCGAGTTTTTAA
GCCACCGTTTCTCGGGACTTCAAGTTGAAACACTCTTCGACCGCTTTGAAAAAGATCAAGCGAGTTTTCCAGAAATGACG
CAAGCAATGCGTCGCTTTAAAGAAAGTGCGCCCTTTATGCAACAAATTGCGGCCTACGTTAAACAGGTCTCTACACAACC
GCTTGCTTTCAATGACCTCTATTTTGAAGATCGGCCTTTCTTTACAAAAGCGCAAATCAATAAAATCTATCTTGATCTCC
CACATAATATGCGTCCTGGTGATAAATTTATTGCTACTAAGAACACCTTAATTAAGCGGCTCAAACGCCAGATCAATTTA
GAAGTGCACCTTGATTGGGTCGCTGAAAAAATTGATACCTTATCCGATGATGACTACCGCGCCATTGTCGGTGATCGCGA
ATTTGATTCCGGCGATTTAGAGCAAGCTTTTATTGCCCGGGAAATTGTTCAAAATTATTTTGCTGATTTATACGATGCTA
TTTATAACGATTACTTCTTGGATGTGTATACTGAATATCAAAACTTCTTACGAACAGCCTGTCCTGAGACAATCCCGTCC
GCCGTTTGGGCTGCAATGATTGAAACAGTTGCCCAAAATAATGAACGCCATCTCGTTGGTTTGAGTGACGCAGCCCCTAT
TTTATATCTTCGTGACTTATTAACCGATAGTGGTCAAAATCACAGTATTCAGTACTTATTCGTCGATGAAATGCAAGATT
ATAGCATTGCGCAATTTGTCTATCTCCAACATGCTTTTCCCAACGCTAAATTCACGATTCTTGGCGATTACGCACAAGAT
GTTTTTACCGCTACTTACCAAGCTGGTAATTTCATCGAGCGCCTCTGTGCGGCTTTTCCAAAACTAAAAACTAACCAAAT
CAGTTTGACGAAGAGCTATCGCGCGACTGCCCCGATCACGAATTTTGCAAAGGCCCTACTGCCTAAAGAAACAGCCTTGC
AGGCCTTTAGTCGTGACGGTCGGCTTCCCCGCGTTATCACGGCCACCAAAGCTGCTAGTTTAAATGCCTTGACGCAGGAA
ATTTTCCACCTGCAAAAGCGGCATGCAACCATCGCCATTTTAACCAAGGATCAACAAACAGCGCGCCAACTTTTCGCCAG
CCTCACCCCCGATGATCAGGTAACGCTCATCTCCGAGACCACCCGCTCATTGCCAAAAGGCGTCTTGGTATTACCGCTAT
ACCTTGCTAAAGGGCTTGAATTCGATGCCGTCATTGGCTACGATATTTCAGCAACAACCTTCGGCCAAGCAAGCGACGTT
GACTTACTCTATACATTGATGACGCGTGCAATGCATGACTTAACTTTGTTAGGGATTGACACCCTCAGCCCGCTAATTGC
TGATTTAGATCATCAATACTATCAGAGCGTTACAACAACCAAGGAAACGATTGCCTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(689-736)

AAA domain (AAA_19)

(213-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

36.223

100

0.366