Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   CFK78_RS02035 Genome accession   NZ_CP032633
Coordinates   411403..412209 (+) Length   268 a.a.
NCBI ID   WP_016264363.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain ZFM220     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 406403..417209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK78_RS02015 (CFK78_02015) yycF 406600..407313 (+) 714 WP_011373790.1 response regulator YycF -
  CFK78_RS02020 (CFK78_02020) walK 407323..409221 (+) 1899 WP_011373791.1 cell wall metabolism sensor histidine kinase WalK -
  CFK78_RS02025 (CFK78_02025) - 409211..410542 (+) 1332 WP_035147594.1 YycH family regulatory protein -
  CFK78_RS02030 (CFK78_02030) - 410547..411368 (+) 822 WP_035147596.1 two-component system regulatory protein YycI -
  CFK78_RS02035 (CFK78_02035) vicX 411403..412209 (+) 807 WP_016264363.1 MBL fold metallo-hydrolase Regulator
  CFK78_RS02040 (CFK78_02040) htrA 412343..413602 (+) 1260 WP_025016471.1 S1C family serine protease Regulator
  CFK78_RS02045 (CFK78_02045) rlmH 414147..414626 (+) 480 WP_011373797.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  CFK78_RS02050 (CFK78_02050) - 414766..415425 (+) 660 WP_025016470.1 hypothetical protein -
  CFK78_RS02055 (CFK78_02055) add 415482..416507 (-) 1026 WP_035147601.1 adenosine deaminase -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 29695.31 Da        Isoelectric Point: 5.0059

>NTDB_id=276910 CFK78_RS02035 WP_016264363.1 411403..412209(+) (vicX) [Latilactobacillus sakei strain ZFM220]
MVEKDEMRVSVLASSSSGNTTFIETPTQKILVDAGMSGKRVQDLMHSIGRDLKDVDSLLVTHEHRDHSSGVGVLARRYGI
DVYANQPTWDAMASIIGTVPDEHKHVFEMGKTKTLGDIDVESYGVSHDAAAAQFYQFHHNNRAFAILTDTGYVSDQIRGT
IENADAYLVECNHDLEMLRMGKYPWSLKQRILSDTGHLSNEDGASALMAFMGQQTKRVFLGHLSQENNMKELAHLTVASI
LEQHDYGVGTDFEILDTDPAIADPLFVV

Nucleotide


Download         Length: 807 bp        

>NTDB_id=276910 CFK78_RS02035 WP_016264363.1 411403..412209(+) (vicX) [Latilactobacillus sakei strain ZFM220]
ATGGTAGAAAAAGATGAAATGCGGGTTAGCGTCTTAGCCAGCAGTAGTTCAGGCAACACAACTTTTATTGAAACACCAAC
TCAAAAAATATTAGTCGACGCGGGAATGAGCGGTAAACGCGTTCAGGATTTAATGCACAGTATCGGTCGGGATTTAAAGG
ATGTTGACAGTCTACTAGTGACGCACGAACATCGCGATCACAGTAGTGGCGTGGGTGTTTTAGCCCGCCGGTATGGGATT
GATGTGTATGCTAACCAACCGACTTGGGATGCGATGGCGTCAATTATTGGGACCGTTCCTGATGAACATAAGCACGTCTT
TGAGATGGGTAAAACCAAAACACTCGGTGATATCGATGTTGAAAGTTATGGCGTTTCACACGATGCCGCTGCGGCGCAAT
TCTATCAATTTCATCATAATAACCGAGCCTTCGCAATCTTAACGGATACGGGTTACGTTTCGGATCAAATCAGAGGCACT
ATCGAAAATGCGGATGCCTACTTGGTGGAATGTAATCACGATTTGGAAATGTTACGAATGGGTAAGTACCCTTGGTCGCT
TAAACAACGTATTCTTAGTGATACGGGTCATCTATCTAACGAAGATGGGGCTTCAGCCTTAATGGCCTTTATGGGACAAC
AAACAAAGCGTGTTTTCCTAGGTCATTTGAGCCAAGAAAACAATATGAAGGAGTTGGCACACTTAACGGTGGCATCAATT
TTAGAACAACATGATTACGGTGTTGGCACGGATTTTGAAATTTTGGATACTGATCCAGCGATTGCGGACCCTTTATTTGT
TGTTTAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(17-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

59.459

96.642

0.575

Multiple sequence alignment