Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   CFK78_RS01420 Genome accession   NZ_CP032633
Coordinates   283802..285550 (-) Length   582 a.a.
NCBI ID   WP_011375527.1    Uniprot ID   Q38UI2
Organism   Latilactobacillus sakei strain ZFM220     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 278802..290550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK78_RS01400 (CFK78_01400) - 279910..281379 (+) 1470 WP_035146856.1 ABC transporter permease -
  CFK78_RS01405 (CFK78_01405) - 281395..282057 (+) 663 WP_035146852.1 ABC transporter ATP-binding protein -
  CFK78_RS01410 (CFK78_01410) - 282151..282639 (+) 489 WP_052039264.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  CFK78_RS01415 (CFK78_01415) - 282687..283340 (-) 654 WP_094365860.1 MIP/aquaporin family protein -
  CFK78_RS01420 (CFK78_01420) recQ 283802..285550 (-) 1749 WP_011375527.1 DNA helicase RecQ Machinery gene
  CFK78_RS01425 (CFK78_01425) - 285662..286222 (-) 561 WP_016265782.1 TMEM175 family protein -
  CFK78_RS10280 - 286334..286858 (+) 525 WP_239494534.1 hypothetical protein -
  CFK78_RS10285 - 286876..287106 (+) 231 WP_231953259.1 hypothetical protein -
  CFK78_RS01435 (CFK78_01435) - 287124..287636 (+) 513 WP_099960417.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  CFK78_RS01440 (CFK78_01440) - 287752..288135 (+) 384 WP_082268187.1 YxeA family protein -
  CFK78_RS01445 (CFK78_01445) - 288179..288718 (-) 540 WP_076645062.1 cysteine hydrolase family protein -
  CFK78_RS01450 (CFK78_01450) - 288832..289230 (+) 399 WP_076645064.1 Lrp/AsnC family transcriptional regulator -
  CFK78_RS01455 (CFK78_01455) - 289265..289684 (-) 420 WP_157771211.1 DUF2992 family protein -
  CFK78_RS01460 (CFK78_01460) - 289857..290495 (-) 639 WP_231953260.1 DNA alkylation repair protein -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 65752.38 Da        Isoelectric Point: 5.1646

>NTDB_id=276905 CFK78_RS01420 WP_011375527.1 283802..285550(-) (recQ) [Latilactobacillus sakei strain ZFM220]
MQAQAVLKEKFGYDHFREGQADVIESLLAGTNVLAIMPTGGGKSLCYQIPALMLPGLTLVVSPLISLMKDQVDALNENGI
PATFINSTLTQGEVQERFNQAARGEVKLLYVSPERLDSDYFLADLAELTIDLIAVDEAHCISQWGHDFRPSYLRLTDTIK
SMRQQPTIVALTATATSQVADDIMLRLGIQHEVKTGFSRENLAFQVVKNQNSDRYLIDYLKVNKQKSGIIYASTRKEVER
LTKLIEKAKLAVTMYHGGLNEMVRRQNQEDFLYDRKPIMVATNAFGMGIDKSNVRFVVHAQIPGSLEAYYQEAGRAGRDG
LPSEAILLFKVNDVQIQHFFIDQSEMDDENKQREYAKLQEMTQYANTQQCLQQYIVNYFDDDCEKCGRCSNCLDTRESQD
ITIDVQKVLSCIKRMDERFGKVMVAQVLTGSKNQKIMQFRFDELPTYGLMRGDSQKEVSGLIDYLVASGYLRASGGQYPV
LQITLAGVKVLKGQEKVSRKMAAKVQKTLPEDNELFERLRELRRDLAEEQGVPPFVIFSDKTLYSMCEIMPTSLTEMLDV
KGVGENKLEKYGELFLDILVAE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=276905 CFK78_RS01420 WP_011375527.1 283802..285550(-) (recQ) [Latilactobacillus sakei strain ZFM220]
ATGCAGGCACAAGCAGTACTAAAAGAAAAATTTGGCTATGATCATTTTAGAGAAGGCCAAGCAGATGTGATTGAATCCTT
GCTAGCAGGGACCAATGTATTGGCGATTATGCCGACTGGTGGCGGGAAGTCGTTATGTTACCAGATTCCAGCGCTGATGT
TACCGGGGTTAACGCTAGTCGTTTCACCATTGATTTCGCTGATGAAAGATCAAGTCGACGCGCTCAACGAAAATGGGATT
CCGGCAACGTTTATCAATAGTACCTTGACGCAAGGTGAGGTGCAGGAGCGCTTCAATCAGGCCGCACGTGGTGAAGTCAA
ATTGCTTTATGTGTCGCCAGAACGGTTGGATTCTGATTACTTTTTAGCGGATTTAGCCGAATTAACGATTGATTTGATTG
CCGTCGATGAAGCGCATTGTATCTCGCAATGGGGGCACGATTTTCGGCCCAGTTATCTACGCTTAACGGATACAATTAAA
AGCATGCGACAACAACCAACAATTGTCGCACTAACGGCGACTGCTACGTCACAAGTAGCTGATGATATTATGTTGCGCTT
AGGGATTCAACATGAAGTTAAGACTGGTTTTTCACGGGAAAACCTTGCTTTTCAAGTGGTTAAAAACCAAAACAGTGATC
GCTACTTAATCGATTATTTAAAGGTTAATAAGCAAAAATCCGGCATCATCTATGCTAGTACACGTAAAGAAGTTGAACGG
CTCACGAAGCTGATTGAAAAAGCGAAACTGGCAGTCACAATGTATCATGGTGGTTTAAATGAAATGGTGCGCCGGCAAAA
TCAAGAGGATTTTCTCTACGATCGTAAACCGATTATGGTCGCCACGAATGCTTTTGGGATGGGGATTGATAAGAGTAATG
TGCGATTTGTCGTGCATGCCCAAATTCCCGGCAGCTTAGAAGCTTATTATCAAGAAGCAGGTCGGGCCGGACGTGATGGC
TTACCGAGTGAGGCCATCTTACTTTTTAAAGTCAATGATGTCCAAATCCAACATTTTTTCATCGATCAATCAGAGATGGA
CGATGAAAATAAGCAACGGGAATACGCTAAGTTACAAGAAATGACACAATACGCCAACACGCAACAGTGCTTGCAACAAT
ATATCGTCAATTATTTTGATGATGACTGTGAAAAATGTGGCCGTTGTAGCAATTGTCTCGATACACGCGAATCACAAGAC
ATTACAATTGATGTTCAAAAGGTTTTATCGTGCATCAAGCGAATGGATGAACGTTTCGGCAAAGTAATGGTTGCGCAAGT
CTTGACGGGCTCTAAGAATCAGAAGATTATGCAGTTCCGCTTTGATGAATTGCCAACATACGGTTTGATGCGGGGCGATT
CACAAAAAGAAGTCAGTGGTTTGATTGATTATTTAGTCGCATCAGGCTATTTACGGGCTTCTGGTGGTCAATATCCCGTT
TTACAGATCACGTTGGCGGGCGTCAAAGTACTTAAGGGTCAAGAAAAAGTGTCGCGTAAAATGGCTGCTAAGGTTCAAAA
AACATTGCCTGAAGACAATGAGTTATTCGAACGCTTACGCGAATTACGCCGTGATTTAGCTGAAGAACAGGGTGTACCGC
CGTTTGTAATCTTCTCAGACAAGACGTTGTATTCAATGTGTGAAATTATGCCAACCTCACTGACTGAAATGTTAGATGTT
AAAGGTGTCGGGGAGAATAAATTAGAAAAATATGGTGAATTATTCTTGGATATTTTAGTTGCTGAGTAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(513-579)

RecQ zinc-binding (RecQ_Zn_bind)

(332-393)

DEAD/DEAH box helicase (DEAD)

(19-180)

Helicase conserved C-terminal domain (Helicase_C)

(214-319)

RQC domain (RQC)

(396-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38UI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

52.332

99.485

0.521