Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   D7H65_RS29340 Genome accession   NZ_CP032569
Coordinates   6174204..6174830 (-) Length   208 a.a.
NCBI ID   WP_052150494.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain BA7823     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6169204..6179830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7H65_RS29310 (D7H65_29340) - 6169568..6169786 (+) 219 WP_241239353.1 hypothetical protein -
  D7H65_RS33070 - 6169796..6169972 (+) 177 WP_164555912.1 hypothetical protein -
  D7H65_RS29315 (D7H65_29345) - 6170036..6170293 (+) 258 WP_042852677.1 hypothetical protein -
  D7H65_RS29320 (D7H65_29350) - 6170437..6172089 (+) 1653 WP_094226346.1 sel1 repeat family protein -
  D7H65_RS33650 (D7H65_29355) - 6172127..6172699 (+) 573 WP_172688485.1 DUF922 domain-containing protein -
  D7H65_RS29330 (D7H65_29360) - 6172724..6173833 (+) 1110 WP_052150495.1 endonuclease/exonuclease/phosphatase family protein -
  D7H65_RS33075 - 6173953..6174159 (+) 207 WP_010792520.1 hypothetical protein -
  D7H65_RS29340 (D7H65_29370) crp 6174204..6174830 (-) 627 WP_052150494.1 cyclic nucleotide-binding domain-containing protein Regulator
  D7H65_RS29345 (D7H65_29375) - 6175031..6177451 (+) 2421 WP_228757773.1 hypothetical protein -
  D7H65_RS29350 (D7H65_29380) - 6177600..6178163 (+) 564 WP_052150438.1 M15 family metallopeptidase -
  D7H65_RS29365 (D7H65_29390) - 6178537..6178824 (+) 288 WP_057390165.1 hypothetical protein -
  D7H65_RS29370 (D7H65_29395) - 6178928..6179500 (+) 573 WP_033997912.1 hypothetical protein -
  D7H65_RS33080 - 6179497..6179667 (-) 171 WP_179255574.1 hypothetical protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22488.05 Da        Isoelectric Point: 7.7537

>NTDB_id=276884 D7H65_RS29340 WP_052150494.1 6174204..6174830(-) (crp) [Pseudomonas aeruginosa strain BA7823]
MLSTPSSLNSHARLFVSKSESRSFKAKSYILQPGHPEAGSHLLVKGSAQLVIENDGREMILGLLKPGDYFGDLPFPVVVD
GHLVTVQARSQCQVAFMPSSDFQQLVLTTPEMLMDVCGQLNERLSAATRKVGDLAFLDITGRIVSVIQDLVHASFAVKAS
EGTVIPITRQDLGRLASCSRETAGRVLKLLEEQGLIICSGRNITVLKA

Nucleotide


Download         Length: 627 bp        

>NTDB_id=276884 D7H65_RS29340 WP_052150494.1 6174204..6174830(-) (crp) [Pseudomonas aeruginosa strain BA7823]
ATGTTGTCCACCCCCTCGTCCCTGAACAGCCATGCTCGACTCTTTGTGTCGAAGTCGGAGTCTCGAAGCTTCAAGGCTAA
GTCCTATATCCTCCAACCCGGCCACCCCGAAGCGGGTTCTCACCTTTTGGTGAAAGGCAGTGCGCAATTGGTGATCGAGA
ACGATGGTCGCGAGATGATTTTGGGACTACTCAAACCAGGCGACTACTTTGGTGACCTGCCTTTCCCGGTTGTAGTTGAT
GGCCATCTAGTGACCGTCCAGGCGCGCTCTCAATGCCAGGTCGCCTTCATGCCCAGCTCCGATTTCCAGCAGCTGGTCCT
CACTACACCTGAGATGCTGATGGACGTTTGTGGTCAGCTGAATGAGAGGCTGAGCGCGGCAACTCGAAAAGTGGGGGATC
TTGCTTTCCTCGATATAACCGGCCGCATCGTCAGCGTGATCCAAGACCTGGTGCATGCGAGCTTTGCAGTAAAGGCCAGC
GAGGGGACTGTGATTCCAATCACCCGACAGGATCTCGGTCGGTTGGCGAGCTGCTCTCGTGAAACGGCGGGGCGAGTGCT
GAAGCTGCTCGAGGAACAGGGCCTGATCATCTGCTCAGGCCGCAATATCACTGTGCTGAAGGCATAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(22-106)

Bacterial regulatory proteins, crp family (Crp)

(165-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

39.378

92.788

0.365