Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CD630_RS07350 | Genome accession | NC_009089 |
| Coordinates | 1539910..1540956 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile 630 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1513851..1578731 | 1539910..1540956 | within | 0 |
Gene organization within MGE regions
Location: 1513851..1578731
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CD630_RS07235 (CD630_13060) | rimP | 1516267..1516728 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| CD630_RS07240 (CD630_13070) | nusA | 1516758..1517912 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| CD630_RS07245 (CD630_13071) | rnpM | 1517919..1518200 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| CD630_RS07250 (CD630_13080) | - | 1518190..1518501 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CD630_RS07255 (CD630_13090) | infB | 1518523..1520463 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| CD630_RS07260 (CD630_13100) | rbfA | 1520506..1520886 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| CD630_RS07265 (CD630_13110) | - | 1520867..1521544 (+) | 678 | Protein_1361 | DHH family phosphoesterase | - |
| CD630_RS07270 (CD630_13120) | tnpB | 1522193..1523311 (+) | 1119 | WP_011861173.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| CD630_RS07275 | - | 1523429..1523734 (+) | 306 | Protein_1363 | DHH family phosphoesterase | - |
| CD630_RS07280 (CD630_13140) | truB | 1523747..1524652 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| CD630_RS07285 (CD630_13150) | - | 1524783..1525712 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CD630_RS07290 (CD630_13160) | rpsO | 1525816..1526073 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CD630_RS07295 (CD630_13170) | - | 1526313..1527158 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| CD630_RS07300 (CD630_13180) | pnp | 1527283..1529394 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| CD630_RS07305 (CD630_13190) | - | 1529662..1530405 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| CD630_RS07310 (CD630_13200) | - | 1530563..1531810 (+) | 1248 | WP_003438321.1 | M16 family metallopeptidase | - |
| CD630_RS07315 (CD630_13210) | - | 1531845..1532090 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CD630_RS07320 (CD630_13220) | dapG | 1532100..1533323 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| CD630_RS07325 (CD630_13230) | - | 1533436..1534170 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| CD630_RS07330 (CD630_13240) | - | 1534293..1536704 (+) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| CD630_RS07335 (CD630_13250) | mnmH | 1536707..1537765 (+) | 1059 | WP_011861175.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CD630_RS07340 (CD630_13260) | rimO | 1537759..1539093 (+) | 1335 | WP_011861176.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CD630_RS07345 (CD630_13270) | pgsA | 1539080..1539622 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CD630_RS07350 (CD630_13280) | recA | 1539910..1540956 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CD630_RS07355 (CD630_13290) | rny | 1541132..1542673 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CD630_RS07360 (CD630_13300) | - | 1543308..1545089 (+) | 1782 | WP_011861177.1 | UvrD-helicase domain-containing protein | - |
| CD630_RS07365 (CD630_13310) | lepB | 1545171..1545701 (-) | 531 | WP_011861178.1 | signal peptidase I | - |
| CD630_RS07370 (CD630_13320) | - | 1545741..1546565 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| CD630_RS07375 (CD630_13330) | - | 1546822..1547730 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CD630_RS07380 (CD630_13340) | purB | 1547874..1549319 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| CD630_RS07385 (CD630_13350) | - | 1549630..1550082 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CD630_RS07390 (CD630_13360) | - | 1550494..1552071 (+) | 1578 | WP_011861179.1 | PTS transporter subunit EIIC | - |
| CD630_RS07395 (CD630_13370) | - | 1552219..1552971 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| CD630_RS07400 (CD630_13380) | - | 1553104..1554450 (+) | 1347 | WP_009892979.1 | 6-phospho-alpha-glucosidase | - |
| CD630_RS07405 (CD630_13390) | - | 1554562..1555758 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CD630_RS07410 (CD630_13400) | galT | 1556143..1557093 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| CD630_RS07415 (CD630_13410) | - | 1557253..1558005 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| CD630_RS07420 (CD630_13420) | - | 1558097..1558873 (-) | 777 | WP_016729594.1 | 3'-5' exonuclease | - |
| CD630_RS07425 (CD630_13430) | - | 1559188..1561086 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CD630_RS07430 (CD630_13440) | - | 1561214..1562335 (-) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| CD630_RS07435 (CD630_13450) | - | 1562534..1562866 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CD630_RS07440 (CD630_13460) | - | 1562853..1563935 (+) | 1083 | WP_011861182.1 | DUF1700 domain-containing protein | - |
| CD630_RS07445 (CD630_13470) | - | 1563928..1564998 (+) | 1071 | WP_011861183.1 | DUF4097 family beta strand repeat-containing protein | - |
| CD630_RS07450 (CD630_13480) | - | 1565100..1565636 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CD630_RS07455 (CD630_13490) | - | 1565752..1566459 (+) | 708 | WP_009896245.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CD630_RS07460 (CD630_13500) | - | 1566461..1567177 (+) | 717 | WP_009896246.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CD630_RS07465 (CD630_13510) | - | 1567179..1567937 (+) | 759 | WP_011861184.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CD630_RS07470 (CD630_13520) | - | 1568072..1569460 (+) | 1389 | WP_011861185.1 | two-component system sensor histidine kinase | - |
| CD630_RS07475 (CD630_13530) | - | 1569536..1570357 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| CD630_RS07480 (CD630_13540) | - | 1570608..1571762 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| CD630_RS07485 (CD630_13550) | - | 1571945..1572145 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CD630_RS07490 (CD630_13560) | - | 1572566..1572994 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CD630_RS07495 (CD630_13570) | - | 1573137..1573892 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CD630_RS07500 (CD630_13590) | - | 1574593..1575099 (-) | 507 | WP_011861186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CD630_RS07505 (CD630_13600) | - | 1575181..1575501 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CD630_RS07510 (CD630_13601) | - | 1575670..1575867 (+) | 198 | WP_011861187.1 | helix-turn-helix transcriptional regulator | - |
| CD630_RS07515 (CD630_13610) | - | 1575972..1576412 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| CD630_RS07520 (CD630_13620) | - | 1576661..1577104 (+) | 444 | WP_009896258.1 | phage tail terminator family protein | - |
| CD630_RS07525 (CD630_13630) | - | 1577109..1578173 (+) | 1065 | WP_011861188.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CD630_RS07530 (CD630_13640) | - | 1578187..1578615 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=27688 CD630_RS07350 WP_003428218.1 1539910..1540956(+) (recA) [Clostridioides difficile 630]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=27688 CD630_RS07350 WP_003428218.1 1539910..1540956(+) (recA) [Clostridioides difficile 630]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.