Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D7H65_RS11135 Genome accession   NZ_CP032569
Coordinates   2268412..2268906 (-) Length   164 a.a.
NCBI ID   WP_033991178.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain BA7823     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2263412..2273906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7H65_RS11115 (D7H65_32930) - 2265181..2265792 (-) 612 WP_140786418.1 hypothetical protein -
  D7H65_RS11120 (D7H65_32935) - 2265861..2267147 (+) 1287 WP_140786419.1 hypothetical protein -
  D7H65_RS11125 (D7H65_11130) - 2267320..2267997 (+) 678 WP_052150394.1 inovirus Gp2 family protein -
  D7H65_RS11130 (D7H65_11135) - 2268032..2268226 (+) 195 WP_025297465.1 AlpA family transcriptional regulator -
  D7H65_RS11135 (D7H65_11140) radC 2268412..2268906 (-) 495 WP_033991178.1 DNA repair protein RadC Machinery gene
  D7H65_RS11140 (D7H65_32940) - 2269026..2269490 (-) 465 WP_033991179.1 hypothetical protein -
  D7H65_RS11145 (D7H65_11145) - 2269498..2270511 (-) 1014 WP_140786420.1 hypothetical protein -
  D7H65_RS11150 (D7H65_11150) - 2270686..2271033 (+) 348 WP_033982519.1 helix-turn-helix domain-containing protein -
  D7H65_RS11155 (D7H65_11155) - 2271343..2272272 (-) 930 WP_140786421.1 hydrolase or metal-binding protein -
  D7H65_RS11160 (D7H65_11160) - 2272367..2273371 (-) 1005 WP_140786422.1 YqaJ viral recombinase family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18120.77 Da        Isoelectric Point: 6.4053

>NTDB_id=276832 D7H65_RS11135 WP_033991178.1 2268412..2268906(-) (radC) [Pseudomonas aeruginosa strain BA7823]
MTAKFKAGESAGTYIADAPVTEADIVEMAQHLASKRLRKGQALHQPKEVFGYLQLLLQDYEHEVFALLLLDSKHRVIRFE
ELFRGTLDSASVYPREVVKVALEHNAAAIVLVHNHPSGDPEPSHADRVLTSRLKQALEMVGVRTLDHIIVGAEGCVSLAE
QGYL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=276832 D7H65_RS11135 WP_033991178.1 2268412..2268906(-) (radC) [Pseudomonas aeruginosa strain BA7823]
ATGACTGCCAAATTCAAGGCCGGCGAGTCCGCTGGCACCTACATCGCCGATGCACCGGTGACCGAAGCCGATATCGTGGA
AATGGCTCAACATCTGGCCAGCAAGCGGCTGCGTAAAGGCCAGGCCTTGCATCAACCCAAGGAGGTCTTTGGCTACCTGC
AGCTCCTGCTGCAGGACTATGAACATGAGGTATTTGCACTGCTACTGCTGGACAGCAAACACCGTGTCATTCGATTTGAG
GAGCTGTTTCGCGGCACCCTGGACAGTGCCAGTGTCTATCCCCGCGAAGTCGTCAAAGTAGCGCTGGAACACAATGCAGC
AGCAATAGTGTTGGTGCATAACCACCCTTCCGGTGATCCGGAGCCAAGCCATGCAGACCGCGTCCTGACCAGCAGGCTCA
AGCAAGCACTCGAGATGGTGGGCGTACGCACGCTCGACCACATCATCGTGGGGGCTGAGGGCTGCGTATCGCTCGCCGAA
CAGGGATACCTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.571

85.366

0.372