Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AX062_RS11625 Genome accession   NZ_CP027390
Coordinates   1986071..1986700 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2015C-4944     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1974993..1997873 1986071..1986700 within 0


Gene organization within MGE regions


Location: 1974993..1997873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AX062_RS11565 - 1974993..1976012 (+) 1020 WP_001299351.1 tyrosine-type recombinase/integrase -
  AX062_RS11570 yccA 1976420..1977079 (+) 660 WP_000375138.1 FtsH protease modulator YccA -
  AX062_RS11575 tusE 1977170..1977499 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  AX062_RS11580 yccX 1977496..1977774 (-) 279 WP_000048244.1 acylphosphatase -
  AX062_RS11585 rlmI 1977869..1979059 (+) 1191 WP_000116301.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  AX062_RS11590 hspQ 1979117..1979434 (+) 318 WP_001295356.1 heat shock protein HspQ -
  AX062_RS11595 yccU 1979479..1979892 (-) 414 WP_000665217.1 CoA-binding protein -
  AX062_RS11600 yccT 1980065..1980727 (+) 663 WP_000847791.1 DUF2057 family protein -
  AX062_RS11605 mgsA 1980823..1981281 (+) 459 WP_000424181.1 methylglyoxal synthase -
  AX062_RS11610 helD 1981313..1983367 (-) 2055 WP_001297106.1 DNA helicase IV -
  AX062_RS11615 yccF 1983490..1983936 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AX062_RS11620 yccS 1983946..1986108 (+) 2163 WP_000875023.1 YccS family putative transporter -
  AX062_RS11625 sxy/tfoX 1986071..1986700 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AX062_RS11630 sulA 1986919..1987428 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AX062_RS11640 ompA 1987785..1988825 (+) 1041 WP_000750416.1 porin OmpA -
  AX062_RS11645 matP 1988900..1989352 (-) 453 WP_000877167.1 macrodomain Ter protein MatP -
  AX062_RS11650 ycbZ 1989538..1991298 (+) 1761 WP_000156528.1 Lon protease family protein -
  AX062_RS11655 fabA 1991367..1991885 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  AX062_RS11660 rmf 1991955..1992122 (-) 168 WP_000828648.1 ribosome modulation factor -
  AX062_RS11665 pqiC 1992378..1992941 (-) 564 WP_000759122.1 membrane integrity-associated transporter subunit PqiC -
  AX062_RS11670 pqiB 1992938..1994578 (-) 1641 WP_000445533.1 intermembrane transport protein PqiB -
  AX062_RS11675 pqiA 1994583..1995836 (-) 1254 WP_000333176.1 membrane integrity-associated transporter subunit PqiA -
  AX062_RS11680 uup 1995966..1997873 (-) 1908 WP_000053122.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=276783 AX062_RS11625 WP_000839153.1 1986071..1986700(-) (sxy/tfoX) [Escherichia coli strain 2015C-4944]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=276783 AX062_RS11625 WP_000839153.1 1986071..1986700(-) (sxy/tfoX) [Escherichia coli strain 2015C-4944]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment